Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01780 ATGTTGAATTCGCAAGGCCAATTTGAACAAAGAATGTGGGATGATGAGAAGAAAGAAATGAAACTTTCATGGACTAGTCAAGAATGGGATTGTGATGTTTATGGTAAATGTGAGTCGTTCGCAATCTGTAATCCACTGAGGTCACCTATATGCAGATGTTTGGAAGGGTTTAAGCCAAGTAACAAAGAGGAATGGAATAGACAAAACTGGACTAGTGGATGTGTTAGGAGCAAAGATTTGCAGTGTGGAAGGGTCAAAGATCAAAACACAAGTGTAGATGGAAAGGAAGATGAATTTTTGGTAAAGAAGATGGTTAAAGTTCCAGATTTTCCAGAATGGTCTCCTCTTGAGGCAGACGAGTGCAGAATCCAATGCACGGAGAATTGCTCTTGTGTTGCGTTTTCTCACGATGAAGTGAATGGTTGTATGTCTTGGACTGGCAATCTACTTGACATACAACAATTCTCAAGTGAAGGACTTGATCTATATGTTCGTGTTGCCCATAATGATAAAGGGACAAACACAAGAACCATCATTACAATTACAGTGATAGCAGGAACTGTCATCATTGTTATTTGTGCATATCTCATGTGGAGAAGAACTGCCAATCACCCAGGTAAGACACTATCTTCGGTACTTTCAGAATTAGAGCTGTTACTATTTGATTTCGAAAGGGTAGCAACAGCCACAAACAATTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTCGGTCCAGTGTACAAGTTGTTCTCTTATTATTTATTTATTTTTTCTTCGGGGATACTGCGAGATGGACAGGAAATAGCTGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGGCTTTTTGGCTGCTGTGCTGAAGGTGATGAAAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGATGTGTTTATCTTTGGTTATTCCATCAAAACTGAAGTTCTAGATTGGGGGAAGCGTTGTAGCATAATAGAAGGAATAGCTCGGGGATTGCTTTATCTTCACAGAGACTCTAGACTAAGAATCATACACAGAGATCTGAAGGCAAGTAATATCTTGTTAGATGAAGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGAATGAAGATCAGGCCAACACTAACAGGGTTGTTGGAACCTATGGCTATATGTCCACTGACTATGCATGCAAGGTCTGGATACAATGGAGGAATTGTAATATATTATCTTTAATAGATCTGGATATATGA 1320 0.3917 MLNSQGQFEQRMWDDEKKEMKLSWTSQEWDCDVYGKCESFAICNPLRSPICRCLEGFKPSNKEEWNRQNWTSGCVRSKDLQCGRVKDQNTSVDGKEDEFLVKKMVKVPDFPEWSPLEADECRIQCTENCSCVAFSHDEVNGCMSWTGNLLDIQQFSSEGLDLYVRVAHNDKGTNTRTIITITVIAGTVIIVICAYLMWRRTANHPGKTLSSVLSELELLLFDFERVATATNNFHLSNKLGQGGFGPVYKLFSYYLFIFSSGILRDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLFGCCAEGDEKMLIYEYMPNKSLDVFIFGYSIKTEVLDWGKRCSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGGNEDQANTNRVVGTYGYMSTDYACKVWIQWRNCNILSLIDLDI 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01780 439 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 320 412 - -
Pumo11g01780 439 Pfam PAN-like domain 95 152 IPR003609 -
Pumo11g01780 439 ProSiteProfiles PAN/Apple domain profile. 82 167 IPR003609 -
Pumo11g01780 439 Gene3D Transferase(Phosphotransferase) domain 1 320 425 - -
Pumo11g01780 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Pumo11g01780 439 SMART serkin_6 233 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01780 439 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 421 - -
Pumo11g01780 439 CDD PAN_AP_plant 79 167 - -
Pumo11g01780 439 Pfam S-locus glycoprotein domain 1 60 IPR000858 GO:0048544
Pumo11g01780 439 SUPERFAMILY Protein kinase-like (PK-like) 207 419 IPR011009 -
Pumo11g01780 439 ProSiteProfiles Protein kinase domain profile. 233 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01780 439 SMART ntp_6 94 166 IPR003609 -
Pumo11g01780 439 Gene3D Phosphorylase Kinase; domain 1 196 319 - -
Pumo11g01780 439 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 199 319 - -
Pumo11g01780 439 Pfam Protein kinase domain 233 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01780 Pumo-Chr11 49512599 49514734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01780 171 419 Receptor kinase-like Gene Family AT4G05200 53.516 1.49e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo11g01780 Pkinase 5.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01780 - - gmx:113002415 587.415