Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01762 ATGGACGATTACGCGAGCAGCGACGAGGATTATCAATACGACTCCGATCAGGAGGGCTCCGTCGAGGCCTACGAAAACGACGAGGATTACGCGTTGCTCTCTTCCAAGGGTCCCACTAGTAAGGTGATTACGAAGGAATCACTGCTAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGTACGCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGCTGTTTGCAGTGTTAGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGTGGCTCTGACTCACCTGTTCCTTCTACATTCATGTGCTACATCTGCATGGATGATGTTCCTAGTGACAAAACAACGAGAATGGACTGTGGTCACTGCTTTTGCAACGCCTGTTGGGTAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAGAGAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTGCTTGAGTCTTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGCGGCGTGCAATTTTGTTTTAGGTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGCATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACAGCTGAACGTGCAAAGAGGGATCTATATCGGTATATGCACTATCATAATCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGTTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTACATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAGACCTTTTCAGATGATAAGGTTGTGGAGATTAGGATGCAGATACTCAACCTTTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCATAATATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCATCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATAATACTGGTGTAACAGCAGAACTTGATCGGCCTTCTGGATCAGGGAGTTCAGATGATAGTGGATGCTCTTCTCGTAATAAACGTGCTAGAAAAGATGGTCTTGAAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1743 0.424 MDDYASSDEDYQYDSDQEGSVEAYENDEDYALLSSKGPTSKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVLVDKGKSFLFAEAGVSVDEHRGSDSPVPSTFMCYICMDDVPSDKTTRMDCGHCFCNACWVEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSREHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHNIAPYKSKGIERASELSVCWNNKVNNTGVTAELDRPSGSGSSDDSGCSSRNKRARKDGLEGGFFDLNLPAEFVDRN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01762 580 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
Pumo11g01762 580 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Pumo11g01762 580 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
Pumo11g01762 580 SUPERFAMILY RING/U-box 191 259 - -
Pumo11g01762 580 SMART ibrneu5 191 253 IPR002867 GO:0008270
Pumo11g01762 580 SMART ibrneu5 261 326 IPR002867 GO:0008270
Pumo11g01762 580 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 394 IPR031127 GO:0004842|GO:0016567
Pumo11g01762 580 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Pumo11g01762 580 MobiDBLite consensus disorder prediction 1 21 - -
Pumo11g01762 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 206 IPR013083 -
Pumo11g01762 580 SUPERFAMILY RING/U-box 116 203 - -
Pumo11g01762 580 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Pumo11g01762 580 CDD Rcat_RBR_ARI1-like 274 327 - -
Pumo11g01762 580 MobiDBLite consensus disorder prediction 534 551 - -
Pumo11g01762 580 MobiDBLite consensus disorder prediction 534 561 - -
Pumo11g01762 580 SUPERFAMILY RING/U-box 261 318 - -
Pumo11g01762 580 CDD RING-HC_RBR_TRIAD1 118 171 - -
Pumo11g01762 580 Pfam Ariadne domain 330 580 IPR045840 -
Pumo11g01762 580 CDD BRcat_RBR_ANKIB1 198 262 - -
Pumo11g01762 580 Gene3D - 249 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01762 Pumo-Chr11 49197009 49200868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01762 60 555 ARIADNE family AT2G16090 70.000 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01762 K11968 - gmx:100783343 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01762 11 49197009 49200868 Pumo11g01762 11 49197009 49200868 ECH