Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01750 ATGAAACCTAGTCGTGATGAATCCATTGAGCACTCAACACGTGCAGCAATGGATGACGAATTGATAAAAGAAAGTGATGGAATAGCGTGGAAGAATGGCACGGGAAAACAACCCACTGGCCTCAACTTCACCAAAGCCGACGTGTCTCCGTGGAGCAGAGCAGAGCAGCCAGCCACGACAATACTCTCTTCTCTCTATCTCTCTCTCTTTTTCTTTTGTAGAACTAAAACCCTATTCCTCTGTTGTTACCATTCTCATCAAAATCACATTCCCATCATCATCACGATGATGGCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCATCTCCATATCCAACACCAATCCTCAACAAGTCTTTCTTACCACCGCCGTCAAACTCACCGGCGGTTGACTTCAGTCCACCCTTGATAGCAATGGTCGTCGTCGTCGCCGCCGCGTTTCTCGTCGTCACCTACTCCCGCCTCATCGCGCGCCACCTCAGGCCGCCCGTCCACCGCCTCCTCCGGCGCTTCCGACGGCGGCGCTTCCTCCCGTCCTCCGTCGGCGACCTGGAGTCCCTACCCTACGAGTCTCCCTTTGATGGACCGCACGTGTTCTCTCCCTACGGTTTGGACGAAACGGTGATCAAGACGATACCGTTTTCGCTTTATACCGCGAAATACGACGCGCGTTTTGAAGAGTCCCGCAACGACTGCGCCGTTTGCTTGCTCGAATTCGAAGACGAAGATTACGTGAGAACGCTTCCGGTTTGTTCACACACGTTCCACGTGGATTGCATCGACGCTTGGCTTCGCTCGCACGCTAACTGTCCTCTCTGCCGCGCCGGAGTTCTCTGCACTGATTCACCTTTCACTCCCATGATGGCCGCCAGAATCCGACCAAGCCTCGACGACGACACAATTCTTCACCGTATCAGTATGGATCCTCTCCTCGATCCGCCTGCGGCTGCGGCGGCTATCTCCTCCGTGCCGGAGATTACTCCTTGCGTCGATGAACACTCTCCGAGGAGAAACCAGAACCATGTGAATGCTAATTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGATTTGAACGGAGTCTGGCGTCGGAGAGGATGGTGATGGAACCGGCCACGGCGTCGCCGTGGCGGTACAGGAGAGGGAGTAGCAGTTTCTGGAGCAAGAGGCCATCGCCGTTTGGGTCGTTGGGGAAGCCGAGGGTGTTTTCGTTTAGGTATTATAGAGGGATGAAGTCACCGTTCTTCCGGCGGAGGGGATTTTTTCCGTTGTCGGAGTCGCGCGTGAGGTACGGCGGCGGGGAGAGCTCGTCGCGGCGGAGCAAGTCGATAGCGAGTCCGATGTTTCTGCGGTCGTCGGGGCTGGCGGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTGTCGCCGGAGAGGTTTAACCGGAGGTGA 1467 0.5603 MKPSRDESIEHSTRAAMDDELIKESDGIAWKNGTGKQPTGLNFTKADVSPWSRAEQPATTILSSLYLSLFFFCRTKTLFLCCYHSHQNHIPIIITMMAPSQPPHWAPSPSPYPTPILNKSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPVHRLLRRFRRRRFLPSSVGDLESLPYESPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSLDDDTILHRISMDPLLDPPAAAAAISSVPEITPCVDEHSPRRNQNHVNANSEDCFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESRVRYGGGESSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01750 488 FunFam RING-H2 finger protein ATL65 198 279 - -
Pumo11g01750 488 SMART ring_2 233 274 IPR001841 -
Pumo11g01750 488 PANTHER RING-H2 FINGER PROTEIN ATL16 121 302 IPR044600 GO:0016567|GO:0016740
Pumo11g01750 488 SUPERFAMILY RING/U-box 217 280 - -
Pumo11g01750 488 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Pumo11g01750 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 279 IPR013083 -
Pumo11g01750 488 Pfam Ring finger domain 231 275 IPR001841 -
Pumo11g01750 488 CDD RING-H2_EL5-like 232 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01750 Pumo-Chr11 49094326 49095909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01750 126 488 C3H Transcription Factor Family AT3G18930 52.010 6.29e-97 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01750 - K19041 gmx:100806115 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01750 11 49094326 49095909 Pumo11g01750 11 49094326 49095909 ECH