Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01736 ATGACTACTGGTGCCTTGAGATACCCTGATTTCTTCAAAGTCTTCCTTCCAGAGCGGCATTCTGAAAGAATGCTTATCCCAAATGCTTTTGTGAGGTTGCCACAGTTACAAGGAAGGATCCCTGAGGATGTCATCCTCAGAAATGCTAGTGGGAGAGTGTGGCATGTCAAAACACGCTACATTGAAGAGAAATTATATTTCGATGATGGGTGGAGGGCTTTCCATGAAGAAAACTGCTTAGGACAAGCAGACTTTCTGGTCTTCAAGCATGACCGGAGTAACGAGTTCAAGGTACTGATCCTTGAATTATCAACACAGTGTGAAAAGCCTGAGATAAAGATGGAGGAGGAGGAGGAGGAGAATGAAGAAGAGCAAGCAGCAACACAAGAAGTTGAGGATACAGAGATAATGGAGGAGGAGGAAGAACAAGTTGAGGGCTGTGAGGAGGAGGACAGCTCTTCCGAGGATGAGGACTATGATGATGACAGTGATTCTGATGATGATGATGAGGAGTATGCAGAGATGGAAGTAGAGAGTGAAGCAGAATTCAGTGTTGGATTCAAGCATCAAAGTCATCATAGAAGACCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCAATGCTGAAGATCCTCTTCCAGAATATGTATTTGATCCAGAAATGTGTATTCAGCCGGAGAACAAATTTTTTAAAGCAAGGCTCTACAGAACTAGACCCAACGAATTGCATATTCCAGGAACTGCCATTAAAGACTTTTCCCTTACTTTTCCAGAAAAGATTACCCTTATATGTTGCCAAGCCTGCCAGCACAAGGATATTCAAATAAATGAATTGCGAGACTATCATCGTAACTTGGCACAACAGACACCCATCCACAAGAAGTATTTGGAAGTGACAGGAAGAGTGTGTAGGTGGCGAGATGATCGAATATGTATTAAGGGTTGGGAAAGCTTTTGTAGAAGGAACAAAATTGAAAGAGATGAGGCATGCTTCTGTGAAGTTATATCAGGGGAAGACCAAGGGATTGCATCCATCATGAATGGGATTGTTCTTATTGGGATTGCCATAGGATTTGTTCTTTGA 1086 0.4273 MTTGALRYPDFFKVFLPERHSERMLIPNAFVRLPQLQGRIPEDVILRNASGRVWHVKTRYIEEKLYFDDGWRAFHEENCLGQADFLVFKHDRSNEFKVLILELSTQCEKPEIKMEEEEEENEEEQAATQEVEDTEIMEEEEEQVEGCEEEDSSSEDEDYDDDSDSDDDDEEYAEMEVESEAEFSVGFKHQSHHRRPCKRETASSSNPNAEDPLPEYVFDPEMCIQPENKFFKARLYRTRPNELHIPGTAIKDFSLTFPEKITLICCQACQHKDIQINELRDYHRNLAQQTPIHKKYLEVTGRVCRWRDDRICIKGWESFCRRNKIERDEACFCEVISGEDQGIASIMNGIVLIGIAIGFVL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01736 361 Gene3D - 5 106 IPR015300 -
Pumo11g01736 361 MobiDBLite consensus disorder prediction 113 178 - -
Pumo11g01736 361 PANTHER B3 DOMAIN-CONTAINING 7 336 - -
Pumo11g01736 361 SUPERFAMILY DNA-binding pseudobarrel domain 8 103 IPR015300 -
Pumo11g01736 361 SMART B3_2 11 104 IPR003340 GO:0003677
Pumo11g01736 361 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Pumo11g01736 361 CDD B3_DNA 9 101 IPR003340 GO:0003677
Pumo11g01736 361 Gene3D - 217 346 IPR015300 -
Pumo11g01736 361 Coils Coil 107 157 - -
Pumo11g01736 361 MobiDBLite consensus disorder prediction 111 214 - -
Pumo11g01736 361 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01736 Pumo-Chr11 48947999 48950367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01736 1 346 B3 DNA Binding Superfamily AT3G06160 24.033 3.59e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo11g01736 B3 3.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01736 - - gmx:100811445 470.314