Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01735 ATGCCGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAACCCAACCAACTGAGGCTTCCAGATAGTTTTATGAGGAAATATGGGGGTGAACTCTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAGTATTGGTTCATTGATGGTTGGAAAGAGTTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTATTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGTCTACTTCTGAGATAAACTATCAATCAGCCACACGAAGCAGTAATGAAGGGCTTCACTTCACACATCGTCTTAAATTTTTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCTCAGATTCATCACCTTCCCACCTTGTTCCCAGTTCATTGCAAAATAAAGCTCTTGCTGGATCAGCAGATAAAATGTCGCCCGGAAAGAGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTATTGCCCATTCTTCAAGAAGTGCCAATTCACTAGATAATCGGTTGACCAGAGACGTAGGACTTCAGTTTAATGCAGTCGAGTTTAAAAAATCTACTGAAGAATTGAAATTGCGTGCCTCCATCGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGATGGCCAGGAACCCTCTGCTGAACACGAAGAGGAGGTAGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGCCGGGTTGTCTTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTGCCATCCTGCTTTGCAGAAAAGCACTTGAATGGAGTTTCGGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCGGTCCGCTGCCTTTATAGAGGAGGTAGAGCCAAGTTAAGCCAAGGGTGGTTTGAATTCTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCGTCTTTCGTGTTACCGAGGATGTGGGATTGTTGAGCCCTCCTTTGCAGCAGAACCAAAACATGAGCTCAGCTAAACTGCTGAACACTCCCTTGCAGCAACGCCTCACTTCAACTAAACTGGTTAGAAATTAG 1290 0.4279 MPHPSFHKLLLPSTLQPNQLRLPDSFMRKYGGELSPIVTLSVPDGSVWRVGLKKADNKYWFIDGWKEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLSTSEINYQSATRSSNEGLHFTHRLKFFEEMEDEDSIEISDSSPSHLVPSSLQNKALAGSADKMSPGKSYTPPALQNLFNGSKLNSINWGEGGIAHSSRSANSLDNRLTRDVGLQFNAVEFKKSTEELKLRASIEERMKKTARKKRKSDGQEPSAEHEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDVGLLSPPLQQNQNMSSAKLLNTPLQQRLTSTKLVRN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01735 429 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Pumo11g01735 429 Gene3D - 1 99 IPR015300 -
Pumo11g01735 429 PANTHER B3 DOMAIN-CONTAINING 3 383 - -
Pumo11g01735 429 Gene3D - 273 394 IPR015300 -
Pumo11g01735 429 CDD B3_DNA 294 389 IPR003340 GO:0003677
Pumo11g01735 429 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Pumo11g01735 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
Pumo11g01735 429 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Pumo11g01735 429 Pfam B3 DNA binding domain 6 96 IPR003340 GO:0003677
Pumo11g01735 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pumo11g01735 429 MobiDBLite consensus disorder prediction 241 256 - -
Pumo11g01735 429 SMART B3_2 296 391 IPR003340 GO:0003677
Pumo11g01735 429 SMART B3_2 6 98 IPR003340 GO:0003677
Pumo11g01735 429 MobiDBLite consensus disorder prediction 235 256 - -
Pumo11g01735 429 SUPERFAMILY DNA-binding pseudobarrel domain 2 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01735 Pumo-Chr11 48938263 48942016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01735 1 395 B3 DNA Binding Superfamily AT3G18990 53.500 2.27e-136 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo11g01735 B3 9.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01735 - - gmx:100813285 785.793