Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01734 ATGGGAGACTTTTCATTTCACCAAAATGCTTTAATCTTACAAGAAAACAACATGGAGACAGAGAGGTGGCAGGTGGATTATCATCAGGACAACCCAGTCTTCTTCACTATCATCAAGAACACCAAGCTACTGAAAGTCCCAGAGAAGTTTCTGAAGCATTTGAATGAAGACTTGTCGAGTAATGCAGTTCTTATTGGCCCTTCTGGTGACCAGTGGCAAGTAACTATTTTGAAGAAAGGAAATAACGTGTATATGCAGAATGGTTGGTCACAATTTCTGAAAGACAACTCAGCGGTGCTTGATGAGTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAAATTTTTGGTGAGAATGGATTGGAGAGGCTATGCCTCAAAGAAACAAGAGAAGAACAAGCTGCCATCCCTCAAATTTTAGTAGATCTGCCTTTCAGCAACAAAGGCACACTTTCTAATGGATGCAAGACAAAGAAAACAATACAAAAACAAGCTGCCACCCCAAGTTTGGTGAGGACAAATAAGAATAAACAAAGAAAAACTTTTGTTGGTTCGTCACACCTCCATGAATTGAAGTCTTACAAAAAAGGTAAATATGATGTCTCAAACAAACACATAAATATTTGGCCTTTATATTCCCTTCAACCCCCCAAAAATATCTCATTCTTAAATTTTTGTTTTATGTATGTAACAGATCTGCCTTTCAGCAACAAAGCCTTACTTTCTAAGGACTTCCCAAAGCCTCTGAGTTCAATCAAAACTGAAAGTTCAAAAGCATGGAAATTGGCCGAGTCCTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACAAAATGCAATGTGGAAGATCAGTGCACATTGCCAATTGCTACTGAGTTTGCCAGGAAGTACATTCCTGAAGCAGTGAAACAGATCATTCTTTGGAATTCAGAAGGAAAATTTTGGGAAGTGGTAGTGTCTTGTTTTGGATGTCAAAATAAAAGGTATTCTCGGTTTACGACAGGATGGGGAAGATTCGTTTGTGATAACAAGCTCATGAAAGGTGACACTTGCATTTTTGAACTTGAAGACCAAAACCATTTGAGTGTTCACATATTCAGAACCAGTGTCTGA 1125 0.3884 MGDFSFHQNALILQENNMETERWQVDYHQDNPVFFTIIKNTKLLKVPEKFLKHLNEDLSSNAVLIGPSGDQWQVTILKKGNNVYMQNGWSQFLKDNSAVLDEFLLFTYHGGNCFHVQIFGENGLERLCLKETREEQAAIPQILVDLPFSNKGTLSNGCKTKKTIQKQAATPSLVRTNKNKQRKTFVGSSHLHELKSYKKGKYDVSNKHINIWPLYSLQPPKNISFLNFCFMYVTDLPFSNKALLSKDFPKPLSSIKTESSKAWKLAESFTSRNPHWKHLMTKCNVEDQCTLPIATEFARKYIPEAVKQIILWNSEGKFWEVVVSCFGCQNKRYSRFTTGWGRFVCDNKLMKGDTCIFELEDQNHLSVHIFRTSV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01734 374 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Pumo11g01734 374 CDD B3_DNA 280 371 IPR003340 GO:0003677
Pumo11g01734 374 ProSiteProfiles B3 DNA-binding domain profile. 276 373 IPR003340 GO:0003677
Pumo11g01734 374 SUPERFAMILY DNA-binding pseudobarrel domain 28 122 IPR015300 -
Pumo11g01734 374 Gene3D - 255 373 IPR015300 -
Pumo11g01734 374 SUPERFAMILY DNA-binding pseudobarrel domain 271 373 IPR015300 -
Pumo11g01734 374 SMART B3_2 34 122 IPR003340 GO:0003677
Pumo11g01734 374 SMART B3_2 276 373 IPR003340 GO:0003677
Pumo11g01734 374 PANTHER B3 DOMAIN-CONTAINING 30 369 - -
Pumo11g01734 374 Gene3D - 24 123 IPR015300 -
Pumo11g01734 374 Pfam B3 DNA binding domain 41 120 IPR003340 GO:0003677
Pumo11g01734 374 Pfam B3 DNA binding domain 279 372 IPR003340 GO:0003677
Pumo11g01734 374 CDD B3_DNA 32 119 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01734 Pumo-Chr11 48927901 48930302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01734 33 359 B3 DNA Binding Superfamily AT3G18990 23.164 6.07e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo11g01734 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01734 - - gmx:100809844 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01734 11 48927901 48930302 Pumo11g01734 11 48927901 48930302 ECH