Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01719 ATGGAAGACCATTTTTCCCCTAAGGGAAAGGAAACCGACTATTCCACACCTCCTGGGGCTCAGTTGGAGGAATCAACATCAGTAGATGGTGGAATGAAAAATTCATCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGCCCATCCATGACTGATCAGAGTTTGGCGAATGTGTTTTCATCATTTTCCTCAGCACCATATCCACCACCTGATGGATTGAATTTAGTGGAACATGGCAATGGTCCATTCTTTATGACAGAAGATAGTGAAATTCACAATGGTATGGAAAGTTCTCCTAGCTGTGAGGAGAGAGTTACATTTCAGCAAATGGACATCCAACTTGGGTTCTTAGATGATGCAAATAACTTTGATTCAAAACAAAAACATAATACCTCAGACATGTGCAATTACATAATCTCAAGGTCTTCAGGGAGGTCACTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGAGGAATGTTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATATTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCAAGGGCATTTACATTTTCTGCAGAAGGAAAGACAGGATCATGTCCAGGGCTTCCTGCTCGCGTGTTTATAACACATGTTCCCGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTACTTAAGGTTGGAGCATGCAATGAATCATGAAATTCGTGGATCTATTGCTCTTCCTATATCTGATGTGCACTCTCAAGTGCCGTGTGCTGTACTGGAACTAGTCACTACAAAGGAAAAGCCTAATTTTGATAGAGAATTAGAAATTGTTACTCATGCACTCCAGCTTGTAAATTTAAGGACTACTATGCCCCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAATTGATGTGTTACGCGCCGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGTGATGAAACTGAGAGAATACGAATCAAAGAGGGTCATACAAGCTCCAATGAAAAATGTGTACTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGTTGCAGTAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTAAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATATCCCCTTGTTCATCACGCGCGCAAATATAACTTGAATGCTGCAGTTGCAATTAGACTAAGGAGTACCTATACCAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGACTGGAAGTTCAGAACAGCAACTTTTATTGGACAATCTCTCAGGTACCATGCGGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGAAGGCTCCCAAGCTGGGTTTCCAAAGGAAAAAGTCTCAGGTTTTTTTCCTATGTCCAGGAGAAACTCTCAGATAGCATTCATAAATGATGACCATGATTCGGTTCAGAAGATGTCCTTGAAGGCATCTAACCTGAGAAATAATGGAATTGAAGCTGCTCATAGCCAGGCAATGAATGGATCAAGAAAGCAGGTTGAGAAAAAGAAAACTGCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGAAGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTAAAGAAGATACAAACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGATTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCCGGAGGATCAATCATGCAGGAAATTGAAGCACATAAATATCTTGTGTTTCCTGAGAAAAGTTCTGTGAAAGATCCTAAGCCTGCAACACAAAAAACAGTCTCAGTAGCTCCAGCACCTGGCAGCACTAGTGAGAATTTAACAATTAAGTTGGATGGTGATGATGGTGCTTGTTTGATGGGAAAGCAGCTTGTGCACTCAAGGAGTATGCTTATATCTAATACCAGTGAGGGAGAATTGAAGAAAGACAATGCTTCTTCTGATGATTGTTGTGATGATTCAAAATCAATGGCCATGAATGATGGATCATGCCAGAAAGCCTGCCTTTGGACCAAGACTCAGGATTGTCCTGAGCAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGTGTAGATAGGGTAGAAGGAGCTGATGAACATAACCACCCTACTTCCTCAGGCACTACACACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCGTGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTCAAATCAACTTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGATACTGTTCGTTTCAAGTTTGATCCATCCTCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTGCAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAGTGTATAGAAATTTTGGATGACATTGGCACACGGTGTGTGAAGTTTCTTGTCCGTGATGTGCCTTGTGTTTTAAGCAGCCGTGGCAGCAATAGTTGCTTCTTGTCAGATATCTCATAG 2886 0.4109 MEDHFSPKGKETDYSTPPGAQLEESTSVDGGMKNSSSEDMFSNFSELMNFDTYAGWSNSPSMTDQSLANVFSSFSSAPYPPPDGLNLVEHGNGPFFMTEDSEIHNGMESSPSCEERVTFQQMDIQLGFLDDANNFDSKQKHNTSDMCNYIISRSSGRSLDDRMLRALSFFMESADGGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKTGSCPGLPARVFITHVPEWTSNVGYYNKTEYLRLEHAMNHEIRGSIALPISDVHSQVPCAVLELVTTKEKPNFDRELEIVTHALQLVNLRTTMPPRLLPQCLSSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDETERIRIKEGHTSSNEKCVLCIEESACYVNDVAVGGFVHACVEHHLEEGQGIAGKALKSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAELTGIEGSQAGFPKEKVSGFFPMSRRNSQIAFINDDHDSVQKMSLKASNLRNNGIEAAHSQAMNGSRKQVEKKKTAVEKNVSLSVLQQYFSGSLKEAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQEIEAHKYLVFPEKSSVKDPKPATQKTVSVAPAPGSTSENLTIKLDGDDGACLMGKQLVHSRSMLISNTSEGELKKDNASSDDCCDDSKSMAMNDGSCQKACLWTKTQDCPEQTCSISLVTDEVEVGVDRVEGADEHNHPTSSGTTHSSNGSGSMMHGSSSCSQSFENQKHSKVKSTCVDSGSKMIVKASYRGDTVRFKFDPSSGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECIEILDDIGTRCVKFLVRDVPCVLSSRGSNSCFLSDIS 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01719 961 PANTHER PROTEIN NLP8 113 952 IPR045012 GO:0003700
Pumo11g01719 961 MobiDBLite consensus disorder prediction 1 37 - -
Pumo11g01719 961 Pfam PB1 domain 864 942 IPR000270 GO:0005515
Pumo11g01719 961 SMART PB1_new 861 943 IPR000270 GO:0005515
Pumo11g01719 961 SUPERFAMILY CAD & PB1 domains 856 945 - -
Pumo11g01719 961 MobiDBLite consensus disorder prediction 18 37 - -
Pumo11g01719 961 Gene3D - 858 940 - -
Pumo11g01719 961 MobiDBLite consensus disorder prediction 809 841 - -
Pumo11g01719 961 ProSiteProfiles PB1 domain profile. 861 943 IPR000270 GO:0005515
Pumo11g01719 961 MobiDBLite consensus disorder prediction 815 841 - -
Pumo11g01719 961 CDD PB1_NLP 862 942 IPR034891 -
Pumo11g01719 961 Pfam RWP-RK domain 592 640 IPR003035 -
Pumo11g01719 961 ProSiteProfiles RWP-RK domain profile. 572 660 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01719 Pumo-Chr11 48837155 48843000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01719 1 957 NLP Transcription Factor Family AT2G43500 50.462 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo11g01719 PB1 2.9e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01719 - - gmx:100793770 1692.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04107 4 81771136 81773657 Pumo11g01719 11 48837155 48843000 PCT