Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01706 ATGCCGCTTCCGGCGAAACCGATGAGGGATTCCGACGAGTCAGCGAGTCCGTCGAACAACCTGTGGGTGGGGAATCTGGCGCCGGACGTGACGGACTCCGATCTGATGGAGCTCTTCGCCAAATACGGTGCACTCGACAGCGTAACCTCGTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAGCGCGTCGAAGATGCGAAAGCCGCCAAGAACGCTCTCCAAGGTACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAATTTGCCAGACCGGCAAAGGCATGTAAACAACTTTGGGTGGGTGGTATTAGCCAAGCTGTTACAAAGGACGATTTGGAAGCTGACTTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCCATGAAAATCATGAATGGGAAACAAATAGGTGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAATCTACAAAAAGGGATCAGTTTCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGGAAAGGCGACGGTCAACCAAGTAATATTTTGTGGATCGGTTATCCGCCTGCTGTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATCGAGAGAATCAAGAGTTTTCCTTTGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAAGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAGTGACCTAGTACCAGGCAGTGATTACCCTGGCTTTTTTCCTGGAAGTAATGGACCGAGACCTGATGTATTGCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACCAAACGTACCAATGCGACCTTTTGGTCCTCACGGTGGTGTTGAATCTGTTCTTTCTGGCCCTGAGTTTAATGAGATTAATGCGCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATACTCTCTTCTCCTGCACCGGGCGCTAGGCTTCCTACAAGATCAACCACTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGATGAAGCCCCATTTCCTTTGAGAAATATAGATGATCGGGGGTTAGCTCTAGAACAAACGTATGGGATTGATCCAGCTATTGATGGAGGTGTTTCTGGTCCATATGGAAAGAGTCACCTTGGTCCAGCGAGCTCAAGGATTACAGCTGGAGTACATGGTGTCGTCCAACCTGATAATGATCATATTTGGCGGGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACTGAATTCCTCCGCTATCTTAGTGCCAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAACCATCACATTTGCCTGTACCGACAACTCAGTATATGCAGCAGATTCCTCCTTCGCAGACTGAATATGGTTTGATTCCTATAAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGACCGTTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCACCTACAGGTGGGCCCCCTTCAGTTCATTCTGGGCCTCCAGATTATGTTCCTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTACTCCCTGCAACTACACAATCACCTGCCACTGATGGTGCCAAGTCAGCTGTAGGTTCCTTGACCATGAAGCCTCCATTTCCTCCCATGACACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGCAAATCAATCCACTCATCCTCCTCAACAGTTGAGGAGTATGTATAACATTCACAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTCCTGCTGGCAATCCTGCTCAAGTGGTCTCTGGCCATGATACTGCTGCCAGCATGCAGCACCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTACTCAAAGTGGACAGGTAGCTGCATCCCCCCATGCCAGTCAGCATTATCAAGTTGAGGTCTCCCCCAGCAATCAGAAAGGCTTTGGAATGGTGCAGGGAACAGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAATTCTATTGCCTTGTCTAATCAAGTTAATAGTGCTAATGCTTCACAGCAGCAAACTGCCATGCCATATACAGTGGACCAGGTAAACTCGGACACCCCCAATCAGCAACTTCCTATGTTTGGAGTCGGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGCAGCAGCAACAAGCCCCAGGAGGACATGGGCCAGGAATTCAACAATGA 2979 0.4532 MPLPAKPMRDSDESASPSNNLWVGNLAPDVTDSDLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKDDLEADFRKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKQIGGEHIRVDFLRSQSTKRDQFLDYGQFQGKSLGPTDAYSGQKRPLHSQPPMGRKGDGQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGSDYPGFFPGSNGPRPDVLLNEHPFRPLQMDVFGHNRPMVPNNFPGQLPPSGIMGPNVPMRPFGPHGGVESVLSGPEFNEINALHKFQDGSSKSNMGPNWKRPSPPAPGILSSPAPGARLPTRSTTGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNIDDRGLALEQTYGIDPAIDGGVSGPYGKSHLGPASSRITAGVHGVVQPDNDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLPVPTTQYMQQIPPSQTEYGLIPIKEEQVLPMDYNRPLHEDSKLPAKPVYPPTGGPPSVHSGPPDYVPNNTVAGSQAGVALTPELIATLASLLPATTQSPATDGAKSAVGSLTMKPPFPPMTPNDGNQSHLWKQDNQIANQSTHPPQQLRSMYNIHNAHYQPYPPASAPAGNPAQVVSGHDTAASMQHQGAVSSRHMPNFMMPTQSGQVAASPHASQHYQVEVSPSNQKGFGMVQGTDASVLYNSQAFQQPNNNSLAFQQPNNSIALSNQVNSANASQQQTAMPYTVDQVNSDTPNQQLPMFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQQQQQAPGGHGPGIQQ 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01706 992 SUPERFAMILY RNA-binding domain, RBD 95 186 IPR035979 GO:0003676
Pumo11g01706 992 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g01706 992 FunFam Flowering time control protein FPA 11 93 - -
Pumo11g01706 992 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Pumo11g01706 992 CDD RRM_SF 21 87 - -
Pumo11g01706 992 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Pumo11g01706 992 FunFam Flowering time control protein FPA isoform A 94 208 - -
Pumo11g01706 992 Gene3D - 5 94 IPR012677 -
Pumo11g01706 992 Gene3D - 95 175 IPR012677 -
Pumo11g01706 992 PANTHER RNA RECOGNITION MOTIF-CONTAINING 12 975 - -
Pumo11g01706 992 FunFam flowering time control protein FPA 209 302 - -
Pumo11g01706 992 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Pumo11g01706 992 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Pumo11g01706 992 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Pumo11g01706 992 MobiDBLite consensus disorder prediction 691 705 - -
Pumo11g01706 992 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Pumo11g01706 992 Gene3D - 206 292 IPR012677 -
Pumo11g01706 992 MobiDBLite consensus disorder prediction 739 770 - -
Pumo11g01706 992 SUPERFAMILY RNA-binding domain, RBD 194 294 IPR035979 GO:0003676
Pumo11g01706 992 MobiDBLite consensus disorder prediction 678 713 - -
Pumo11g01706 992 CDD RRM_SF 98 164 - -
Pumo11g01706 992 SMART rrm1_1 217 285 IPR000504 GO:0003723
Pumo11g01706 992 SMART rrm1_1 97 164 IPR000504 GO:0003723
Pumo11g01706 992 SMART rrm1_1 20 87 IPR000504 GO:0003723
Pumo11g01706 992 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Pumo11g01706 992 Pfam SPOC domain 502 619 IPR012921 -
Pumo11g01706 992 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01706 Pumo-Chr11 48687372 48694254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01706 18 163 Eukaryotic Initiation Factors Gene Family AT1G49760 25.309 9.46e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01706 - - gmx:100777570 1872.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04095 4 81641369 81654382 Pumo11g01706 11 48687372 48694254 PCT