Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01699 ATGAGAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACCGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGCCAGCTTTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTAAAGACTGTGATGAACCAATTCATGTAGCCGGTAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCAGGGTGGCTTTGAGTTCTAATTGCACCAAAGGCAATGAAAAAGGTCACGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGATAATTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAATCCCCTGACAAAGTTCAAAAGCAATCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGTAGGCCTTTTCGGTGAACAGTTTCCTCAAGAAGCTTTAGCAGCGGCTGAAGTTCCTCAGCTTCCAGTGACACACACTAGCAGTGTTGCCTCACACAAAGCCCCCAAATCCTTTATGTCTTACAAAAAGCCTAGGATTGAAGTCCTGGATGAAGATGATGATGAGCACTTCACTGTACCTGATCTTGGCTAA 723 0.4523 MRIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALSSNCTKGNEKGHVEPSNPNAQEVPVIIPSQQVPSFTSSWAVDDLLELTDFESPDKVQKQSLEFGELEWLADVGLFGEQFPQEALAAAEVPQLPVTHTSSVASHKAPKSFMSYKKPRIEVLDEDDDEHFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01699 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Pumo11g01699 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pumo11g01699 240 CDD Bbox1_BBX-like 5 47 - -
Pumo11g01699 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pumo11g01699 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo11g01699 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Pumo11g01699 240 CDD Bbox1_BBX-like 57 98 - -
Pumo11g01699 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pumo11g01699 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo11g01699 240 Gene3D Classic Zinc Finger 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01699 Pumo-Chr11 48649751 48654070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01699 1 162 Orphan Transcription Factor Family AT1G06040 67.456 2.53e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo11g01699 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01699 - - gmx:732574 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04090 4 81604922 81605363 Pumo11g01699 11 48649751 48654070 PCT