Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01688 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGTTTCCAGACAGGTGCGCTCAAGTGATAGGATCAAGACAAGGCCAAACATTTATGGCCGGCCATTCTTGTATTACAACCAAAATCTTAGGCGCACCAGGAAAAGCAAGATCAAGACAAGGACCGCAGCTTCGCAGATTGCTAAGATGTTGCGTCCAGGGAATCGAAAATCACAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTGAAGATGAAGACTTAATGAGACCACCTACATATCCATCATTGAGAAACCGGATGAACAATAGTGTCAGACGGGATGGCTTGATGTCTAATAAGCGCAAAAGAGGAGCGGAGACTAAACAAACACCTCGACGTGAAGGTCTGCGTCCTCGTCGTTCAAAGGGTGCTGCAATAGAACGATTAATTTCAGAATCAGATGATGAGCAAGACCTTTCAGAGGAAAAGGTTGATCAGGATGAAACAGAAAATGGAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGATGCTGAGGGGGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGAACACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTCCATGGGGGCGAGGTGGCAATAGATCTGGTCCGCCTTGGCTTTTTGGGGGCTTAGACATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCCACTCTAACTTCGGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGACGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAGATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGCCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCTAAAGCTGGCCAGAAGGTTAGCTTTTATATGCGCAAAGGAGCAGATGTGTTGAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATCGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGACCGTGAGTTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCACACTCGTAAGTGGAAGCATCCTCCACCAAATGAGCTGAAAAAGGAGCTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAGGTTTATACTAGTGATGACAAATTTGTCATTGATGTGGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCCATGTCTACGATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCTTTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCCTCCAGCTTCAATTGCATCAGAGTTGACCAAACTTTCGATGCTCTCCTACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTGCTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCAGAGGAGGCGTTAGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAATTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCAGGGCTGTTCTCCTGACTTTGCTAGAAGAATTACCATCTGACTTGCCTATCTTACTGCTTGGTACATCCTCGGTTGCACTTGCTGAAGTTGAGGAAGTGCCTACTTCCATTTTCCCTCATCGCTCAGTTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGCTATGTCGATATTGTTGGAGGGAATCAACAAGAAATCTCAGGATACAGGATGCCTCCCTGAACTTCCCAAGGCACCGATATTGGCTAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATACTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTGACAGACGAAGATGCACCAAATTATCGTTCAATTATACAGAACCCAATGGACATGGCTACCATCCTGCAGCATGTTGATAATGGCCACTATATTACATGTGCTGCATTCCTGCAGGACATCAATCTCATTGTTTCCAATGCAAAGGCTTACAATGGAGAGGACTACAATGGCGCTAGGATTGTCAGTAGAGCTTGCGAGCTCCGTGATGCGGTGCAAGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGCGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTGCAGCTGGGTCATAGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGCATTGAAGCGAAGTAAGAAGATCGCCGAAGTGCATGCAGCAGAAGACAAGTCACAAGATTCGGTACCATCAAAGTCTTCCCAGGAGCAGCAGGCAAATGACACAAATTCTGAAAGGGTGGAACCTGTGTCAATTGAAGGAGATTTGCATGGAACTTGTACAAATAACCTTGCTGATGGCAACAGTCCTGATGATGTCACAATGCTAGATGGTGAATTTTCAAGAGAAGTAGAGTCTATCGAGCAGCTTTTTGTGAAGCGTAGTGAGAATTACAGCATTCCACAACTTGAAAGGCTGTACACGAGAATTATGAAGGGCGTGTTCGAAACCAAAAATAAAGGAGTGAATGGGGATCTTAAGTCTTCGGTTTTGATGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3588 0.447 MYPKRSGQDGPVSRQVRSSDRIKTRPNIYGRPFLYYNQNLRRTRKSKIKTRTAASQIAKMLRPGNRKSQDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPPTYPSLRNRMNNSVRRDGLMSNKRKRGAETKQTPRREGLRPRRSKGAAIERLISESDDEQDLSEEKVDQDETENGNDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKARPRSPRRVLHQGMGTKVSRDVRKGGTRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALAEVEEVPTSIFPHRSVYQVNMPCAKDRTLFFNLLIEAAMSILLEGINKKSQDTGCLPELPKAPILASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVTDEDAPNYRSIIQNPMDMATILQHVDNGHYITCAAFLQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVQGMLSQMDPALVAYCDKIASQGGPVQLSDELGDSTFPATPVVQLGHSTRMSARLRHVQPEVNMDQSYEALKRSKKIAEVHAAEDKSQDSVPSKSSQEQQANDTNSERVEPVSIEGDLHGTCTNNLADGNSPDDVTMLDGEFSREVESIEQLFVKRSENYSIPQLERLYTRIMKGVFETKNKGVNGDLKSSVLMFLLNFVEDDANF 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01688 1195 ProSitePatterns AAA-protein family signature. 517 535 IPR003960 GO:0005524|GO:0016887
Pumo11g01688 1195 Gene3D - 370 640 IPR027417 -
Pumo11g01688 1195 Pfam Bromodomain 905 973 IPR001487 GO:0005515
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 1078 1098 - -
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 167 219 - -
Pumo11g01688 1195 FunFam ATPase family, AAA domain-containing 2 370 553 - -
Pumo11g01688 1195 CDD Bromo_AAA 892 1002 - -
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 1064 1102 - -
Pumo11g01688 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 911 IPR027417 -
Pumo11g01688 1195 PRINTS Bromodomain signature 924 940 IPR001487 GO:0005515
Pumo11g01688 1195 PRINTS Bromodomain signature 940 958 IPR001487 GO:0005515
Pumo11g01688 1195 PRINTS Bromodomain signature 958 977 IPR001487 GO:0005515
Pumo11g01688 1195 PANTHER AAA DOMAIN-CONTAINING 1063 1173 IPR045199 -
Pumo11g01688 1195 Gene3D - 548 633 - -
Pumo11g01688 1195 SMART bromo_6 892 999 IPR001487 GO:0005515
Pumo11g01688 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 637 IPR027417 -
Pumo11g01688 1195 Pfam ATPase family associated with various cellular activities (AAA) 412 547 IPR003959 GO:0005524|GO:0016887
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 220 250 - -
Pumo11g01688 1195 ProSiteProfiles Bromodomain profile. 915 977 IPR001487 GO:0005515
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 128 166 - -
Pumo11g01688 1195 FunFam ATPase family AAA domain-containing protein 884 1012 - -
Pumo11g01688 1195 Pfam AAA+ lid domain 574 611 IPR041569 -
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 60 287 - -
Pumo11g01688 1195 SMART AAA_5 408 549 IPR003593 GO:0016887
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 65 80 - -
Pumo11g01688 1195 Gene3D - 686 811 IPR027417 -
Pumo11g01688 1195 FunFam ATPase family AAA domain-containing protein 2B 548 633 - -
Pumo11g01688 1195 SUPERFAMILY Bromodomain 890 1004 IPR036427 GO:0005515
Pumo11g01688 1195 Gene3D - 884 1012 IPR036427 GO:0005515
Pumo11g01688 1195 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01688 Pumo-Chr11 48536711 48543042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01688 358 612 Calmodulin-binding Proteins AT3G56690 36.680 8.08e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01688 K22531 - gmx:100787765 2208.72