Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01682 ATGGGAAGCTGCATATCAACGCAAGGCGTGAAAACACGCAAGAAGCTGAGGAGCCCGAACAAGCCCTCCTCGCCGAAAGGGCATGGCGGGCACGAGCCGGCACGAAAGTCGAGCATGGTGGCGGCGCGTAGGTCGAGCGTGACGGCGCGTCCGCTGAACGTGGTGGCGAACCCGAGCCCCGGGAACATATTTGACAAGTACCAGTTCGGGAAGGAGCTCGGGCGCGGCGAGTTCGGCGTGACGCACCGTGTCGTCGACGTGGAGAGCGGCGAGGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGGACGGAGATTGACGTGCAGGATGTGAGGAGGGAGGTGCAGATCATGCGGCACTTGCCTCAGCACCCCAACATTGTTGCCTTCAAGGAGGCTTATGAGGACAAAGACGCTGTTTACCTTGTCATGGAATTGTGTGAAGGTGGCGAACTCTTTGATAGGATTGTTGCTAAGGGACATTACACCGAGCGTGCTGCTGCTAATGTTGCCAAAACCATACTTGAAGTTTGCAAGATGTGTCACGAGCACGGAGTAATACACAGGGACTTAAAGCCAGAAAATTTCTTATTTGCAGATGCAAGCGAGACTGCTGCATTGAAGTCAATTGATTTTGGCCTTTCCACCTTCTATGTGCCTGGCGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCCGAGGTTTTAAGACGTAACTACGGACCAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTACATTTTACTTTGTGGCGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCACAAGCGATCATCAAGGGAAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCTAAACATCTAGTTAAGCGCATGCTTGATCCAAATCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGATCATTCCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGGAAGGTTCTTAGAGTGGTGGCGGATAACCTGTCAGATGAGCAAGTTGATGTGTTTAAGCAAATGTTCGATATGATGGATAAGGACAAGAATGGAAACTTGTCATTTGAAGAGCTCAAAGATGGCCTTTCAATGATTGGGCACGCCATTCCTGATCCTGATGTACAAATGTTAATGGATGCTGCAGATTTTGATGGAAACGGCTCCCTCAATTATGATGAGTTCATCACAATGAGTGTTCATCTGAGAAAGATCGAAAGTGATGAGCATCTCTCTGAAGCGTTCCGTTACTTTGACAAGAATCAGAGCGGATATGTTGAGTATGAGGAGTTGAAAGATGCCTTATCAGATGATGACTCGGTAGCCAGTGATGACCAAGTGATCAAAGACATTCTAAACGATGTTGACTTGGATAAGGACGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCATCTCGCCAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGATGTTCAAAGACACATCTAGCAATTCTGTTAAGTGTAACTAA 1632 0.4681 MGSCISTQGVKTRKKLRSPNKPSSPKGHGGHEPARKSSMVAARRSSVTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDVESGEAFACKKIAKTKLRTEIDVQDVRREVQIMRHLPQHPNIVAFKEAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKMCHEHGVIHRDLKPENFLFADASETAALKSIDFGLSTFYVPGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIKGKVDFTRDPWPKVSDEAKHLVKRMLDPNPFTRITVQEVLDHSWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQVDVFKQMFDMMDKDKNGNLSFEELKDGLSMIGHAIPDPDVQMLMDAADFDGNGSLNYDEFITMSVHLRKIESDEHLSEAFRYFDKNQSGYVEYEELKDALSDDDSVASDDQVIKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLNALSFKMFKDTSSNSVKCN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01682 543 CDD EFh 444 507 IPR002048 GO:0005509
Pumo11g01682 543 FunFam Calcium-dependent protein kinase 1 69 152 - -
Pumo11g01682 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Pumo11g01682 543 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Pumo11g01682 543 FunFam calcium-dependent protein kinase 13 153 333 - -
Pumo11g01682 543 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01682 543 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Pumo11g01682 543 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Pumo11g01682 543 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Pumo11g01682 543 Gene3D Transferase(Phosphotransferase) domain 1 153 333 - -
Pumo11g01682 543 SUPERFAMILY EF-hand 361 508 IPR011992 -
Pumo11g01682 543 Pfam EF-hand domain pair 385 435 IPR002048 GO:0005509
Pumo11g01682 543 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Pumo11g01682 543 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Pumo11g01682 543 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Pumo11g01682 543 FunFam Calcium-dependent protein kinase 7 334 510 - -
Pumo11g01682 543 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Pumo11g01682 543 Pfam EF-hand domain pair 443 507 IPR002048 GO:0005509
Pumo11g01682 543 MobiDBLite consensus disorder prediction 1 44 - -
Pumo11g01682 543 Gene3D - 334 509 - -
Pumo11g01682 543 CDD STKc_CAMK 66 324 - -
Pumo11g01682 543 CDD EFh 373 432 IPR002048 GO:0005509
Pumo11g01682 543 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Pumo11g01682 543 SMART efh_1 481 509 IPR002048 GO:0005509
Pumo11g01682 543 SMART efh_1 372 400 IPR002048 GO:0005509
Pumo11g01682 543 SMART efh_1 408 436 IPR002048 GO:0005509
Pumo11g01682 543 SMART efh_1 444 472 IPR002048 GO:0005509
Pumo11g01682 543 SUPERFAMILY Protein kinase-like (PK-like) 63 326 IPR011009 -
Pumo11g01682 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 499 - -
Pumo11g01682 543 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01682 543 Pfam Protein kinase domain 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01682 543 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01682 Pumo-Chr11 48498844 48502712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01682 1 534 EF-hand Containing Proteins AT2G31500 66.604 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo11g01682 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01682 K13412 - gmx:100818929 1004.97