Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01681 ATGGCTGCATCGACGATTTTCGCAGCGACAAAGGTCTCCATGGTGGTAGCCGACGATGGAGAAGACGATGTCAGAGTGAGCGGCGATGACGTCAAGGGAGAGGGCAAAGTTTCCTCGATGGACTCGGAAGATGATATGCACGACGCCAACGATGTCGAGTCCCTCGACGACGATTTCTACAGTGGCGAAACCGAGGACGCTCCCTTGGACTACTACAGCGACTACGATGACGGCGCCGATGATTACTTCGACGACGCCGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATCTTGAAGGAATCTGATATCCGTCTAAGACAGGAAGATGACATCACTAGAGTAGCAGCGGTTCTTTCCATATCAAGGTTTTTTGCAAGCATACTACTCCGTCACCACAATTGGAGCGTCAGTAGAGTGCATGATGCATGGTTTGCCGATGAAGAACGAGTCCGAAAAGCAGTTGGCTTGTTGGAGAAGCCGATTGTCCAGCATACTGATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCCTGTGGGCATCCTTACTGTATCTCATGCTGGGAAGGTTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCAGTTGTGGTGCTGCTGTTGGTCAAGATATTATTAATCTTTTAGCCTCCGAAGAAGATAATCAGAAATATGCACGTTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTACTGGAAATTATGATGTCTCTTGCTTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCGCCCTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAAAAGAAGAGAAATGGCAAAGAATTCGCTGGAGAGATACACACATTATTACGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTACAGCAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAAGCCTGGCTACAAATAGTGGAGTGTAGAAGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTGCAGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCAGAAAAGGAACTACAGCCATTCCTATGTGCTGATGATCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGATGTGCTATCAACAGCGTCGATGAAGACTTGGTTCTCCATTTGAAACACTTGTCTCCTGCCCAAGGCCTTCGCACTTGCACCAAAAGCTGA 1704 0.4495 MAASTIFAATKVSMVVADDGEDDVRVSGDDVKGEGKVSSMDSEDDMHDANDVESLDDDFYSGETEDAPLDYYSDYDDGADDYFDDADRIESRRPEQNFTILKESDIRLRQEDDITRVAAVLSISRFFASILLRHHNWSVSRVHDAWFADEERVRKAVGLLEKPIVQHTDTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDIINLLASEEDNQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSTGNYDVSCFCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTEKRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQNVHIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLQEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADDPSREFNDFRTKLAGLTRCAINSVDEDLVLHLKHLSPAQGLRTCTKS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01681 567 ProSiteProfiles TRIAD supradomain profile. 171 385 IPR044066 -
Pumo11g01681 567 SUPERFAMILY RING/U-box 326 374 - -
Pumo11g01681 567 FunFam RBR-type E3 ubiquitin transferase 169 258 - -
Pumo11g01681 567 Gene3D - 303 551 - -
Pumo11g01681 567 CDD RING-HC_ARI6-like 172 233 - -
Pumo11g01681 567 SMART ibrneu5 311 381 IPR002867 GO:0008270
Pumo11g01681 567 SMART ibrneu5 244 307 IPR002867 GO:0008270
Pumo11g01681 567 SUPERFAMILY RING/U-box 245 314 - -
Pumo11g01681 567 ProSiteProfiles Zinc finger RING-type profile. 175 219 IPR001841 -
Pumo11g01681 567 Pfam Ariadne domain 394 516 IPR045840 -
Pumo11g01681 567 Pfam IBR domain, a half RING-finger domain 244 307 IPR002867 GO:0008270
Pumo11g01681 567 Pfam IBR domain, a half RING-finger domain 324 372 IPR002867 GO:0008270
Pumo11g01681 567 SUPERFAMILY RING/U-box 170 256 - -
Pumo11g01681 567 MobiDBLite consensus disorder prediction 19 45 - -
Pumo11g01681 567 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 97 473 IPR031127 GO:0004842|GO:0016567
Pumo11g01681 567 CDD Rcat_RBR_ARI7-like 330 384 - -
Pumo11g01681 567 MobiDBLite consensus disorder prediction 19 59 - -
Pumo11g01681 567 CDD BRcat_RBR_ANKIB1 251 316 - -
Pumo11g01681 567 FunFam RBR-type E3 ubiquitin transferase 308 556 - -
Pumo11g01681 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 257 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01681 Pumo-Chr11 48487858 48496736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01681 56 554 ARIADNE family AT1G65430 71.735 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01681 K11968 - gmx:100784195 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04072 4 81450740 81457597 Pumo11g01681 11 48487858 48496736 PCT