Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01675 ATGTCGACGACCACCGCATCCGGCGGCGACGCTCCCTCTCGCGGCTTTGACACGCCGACGCTGGACCGGGAGTCGGCGGCGCTGCTCCACGCGATTTCAGAGCACGGCGGGTACGCGTACGTGAGCATGGCGGCGCTGGCGGCCGGCGGCGACATTCGCGCGGCGGAGGCGGCGCGCGAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCCTACTCCATGGCGTGCCTCCACGTGGCGCGCCACCACTACGGCAACGGCGAGTTCAGAGACGCGCTTAGGGTTCTGGATTTGGGAATCATCATGGGAGGCACGCTCCTCCGCAAGGATTTGGACTCCGCCGTCGAGAAAGTGTCGGAACAAACCAGAAAGACCGTCAGGGTTTCTGATTTGGGGAACTCCGAGCACCGACTCGTCGATCGCGAATTTGATATAGCTGAGGTGCTCCAACTTTTACCTGTGAAGTCTCTTTCTATGAAGCTTGTGGTGAAGAAATCGGCACTGTCGTTGGAGAAATTCCTGAAGGATCATTACCTCTCTGGCTGCCCGGTTATTATCAGTGATTGTATGGCTCACTGGCCAGCCAAGACAAAGTGGAATGACCAAGATTACTTGCTGAGAGTTGCTGGTGACCGCACGGTTCCAGTTGAGGTTGGGAAAAACTATTTATGTACCGAGTGGAAGCAAGAGCTAATTGCATTTTCAGAGTTTCTTCAGCGGATAAAGTCCGATAGCTGTTATCCTGGTGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACGTTAGGCTTTACCCGTCATCTCTGTCTGAGGAACTTTTCCCCCACTCTGGCACCATGCTCCACAATTCCAGCCAGGTTGATTTAGATGCCATAGATGAAAAGAAGTTTCCTAAGGTGCACGAGTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTGACTACCAGTTTTTCGGTTAGCTTTTGGTGGAGTGAGGCTGAAAGTTCGGATGCACCCTAA 1242 0.5242 MSTTTASGGDAPSRGFDTPTLDRESAALLHAISEHGGYAYVSMAALAAGGDIRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFRDALRVLDLGIIMGGTLLRKDLDSAVEKVSEQTRKTVRVSDLGNSEHRLVDREFDIAEVLQLLPVKSLSMKLVVKKSALSLEKFLKDHYLSGCPVIISDCMAHWPAKTKWNDQDYLLRVAGDRTVPVEVGKNYLCTEWKQELIAFSEFLQRIKSDSCYPGGPTYLAQHPLFDQINELRRDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYPSSLSEELFPHSGTMLHNSSQVDLDAIDEKKFPKVHELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEAESSDAP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01675 413 Gene3D Cupin 171 405 - -
Pumo11g01675 413 ProSiteProfiles JmjC domain profile. 256 413 IPR003347 -
Pumo11g01675 413 SUPERFAMILY Clavaminate synthase-like 177 405 - -
Pumo11g01675 413 FunFam lysine-specific demethylase JMJ30 171 404 - -
Pumo11g01675 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 408 - -
Pumo11g01675 413 Pfam Cupin-like domain 182 407 IPR041667 -
Pumo11g01675 413 SMART cupin_9 262 412 IPR003347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01675 166 404 Acyl Lipid Metabolism Gene Families AT3G45880 25.000 1.34e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo11g01675 Cupin_8 2.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01675 K24444 - gmx:100813075 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01675 11 48132429 48136052 Pumo11g01675 11 48132429 48136052 ECH