Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01669 ATGCTGATGCAGAGGATTCACTTGCTACTCAGAATCCCCCAACTGTTGCTTGCAGTTAAGGAAGAGGTTAATCAGCAACCTCAGGGTATGCCATCCATGAATAATGAACCCCCTGTTCTCCAACAACAACAGCAAAGTAATAATATGAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAAAACACTGGACGACCACCTTTGCCAAACCAGATGAAGGCTGGTTGTGGAAGTAGTTCCAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACTGGCTATGCTGCTGTAAGAGGCATGGGAACTATGGGAGCTGCTAATAGTAACACCAGTGAGGAAGCAAACTTTTCTCCCGCAACAACAAGGATGAAGAATGCACCAAACTACTCTTCAGGACTAATGTCATCTATGGCTGAAATCGGAAACAAGAGCAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAACGCCAGGGTAATGAATTTATCCCTGGTTTCCCCGTTGGTCCATGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGATATAGAGATGAAGATGTAAAACCATTTTCTGGTGTAAATGCACCTGAAAGCCAGAATGAAACTGGAGGCCAACCTTCTTCTGCTTTGGCTCATCAACTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCTATTGAGAGGTTTCTTCAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTGAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTCGTTCCGAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAAGCAAGTTCAGACTCTTTCGGACAATCGGGCTAAGTGTACGTGTTCACACAAGCAGCAGCAATAA 1002 0.4351 MLMQRIHLLLRIPQLLLAVKEEVNQQPQGMPSMNNEPPVLQQQQQSNNMNNYGSSAPQNFYQNTGRPPLPNQMKAGCGSSSNLIRHGSSPAGLFSNINIETGYAAVRGMGTMGAANSNTSEEANFSPATTRMKNAPNYSSGLMSSMAEIGNKSNTQNNAENEGFAERQGNEFIPGFPVGPWDDSAIMSDNMTGLKRYRDEDVKPFSGVNAPESQNETGGQPSSALAHQLSLPNTSAEMAAIERFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKQVQTLSDNRAKCTCSHKQQQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01669 333 MobiDBLite consensus disorder prediction 203 225 - -
Pumo11g01669 333 SMART finulus 267 317 IPR011598 GO:0046983
Pumo11g01669 333 Gene3D - 262 333 IPR036638 GO:0046983
Pumo11g01669 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 330 - -
Pumo11g01669 333 Coils Coil 301 321 - -
Pumo11g01669 333 Pfam Helix-loop-helix DNA-binding domain 266 312 IPR011598 GO:0046983
Pumo11g01669 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 324 IPR036638 GO:0046983
Pumo11g01669 333 MobiDBLite consensus disorder prediction 208 225 - -
Pumo11g01669 333 FunFam Transcription factor bHLH130 family 262 331 - -
Pumo11g01669 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 311 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01669 Pumo-Chr11 48090413 48093083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01669 82 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 49.194 1.47e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g01669 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01669 - - gmx:100803833 542.347