Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01660 ATGAACAACAACTGGCTTTCGTTCCCTCTTTCTCCCACTCATTCTTCCTTACCCGCTCATGATCTTCAAGCAACTCAATATCATCAGTTTTCTCTTGGGTTGGTGAACGAGAACATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCTGACCTTGCTGCCTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACTAACAATAGTCTCGTGCCTATTCAAAACCCAGTGGTGGACACACCTAGCAGCAATGAGTATCAAGAAAATGCTAATAGTAATTTGCAATCACTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGCGAAACCAGTGGTGAAAATAGCACAAACACTGTTGAAGCTGCTGCACCTAGAAGAACTTTGGATACATTCGGGCAGAGAACATCCATATATCGTGGAGTAACCCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGACAATAGCTGTAGAAGGGAAGGGCAATCAAGAAAAGGACGCCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCAATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATAAAGTTTAGAGGTCTGAACGCTGTGACAAACTTTGACATGAGTCGCTACGACGTGAAAGCCATTCTCGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCAAAGCGTCTGAAAGAGGCTCAAGCTCTAGAATCTTCGAGAAAACGCGAAGAGATGATTGCACTAGGCTCATCCACGTTCCAATACGGAACCTCAAGCTCTTCTTCTAGGCTACACGCTTACCCTCTAATGCAGCAGCACCACCAGTTCGAGCAACCTCAGCCTCTGCTAACTCTGCAAAACCATGACATCGGTTCTCACTTCTCTCACCAAGACCCTTTGCACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGCTGCTTCTTCTTATCTTCAGAATAATAATGCTCAGTTCTACAACGGTTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAATAGTCAAAATAATAGCAATGTTGGTGGGTTTGTAGGGAGTGGGTTTGGTATGGCTTCGAATGCAACGTCGGGGAACACGGTGGGAACGGCGGAGGAGCTAGGGTTGGTGAAGGTGGACTATGACATGCCGGCCGGAGGTTACGGTGGCTGGTCGGCAGCGGCGGAGTCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGACTGA 1647 0.4596 MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAALNEIQSNDSDYLFTNNSLVPIQNPVVDTPSSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSSRLHAYPLMQQHHQFEQPQPLLTLQNHDIGSHFSHQDPLHQGYIQTQLQLHQQSGAASSYLQNNNAQFYNGYLQNHPALLQGMMNMGSSSSSSSVLENNNSQNNSNVGGFVGSGFGMASNATSGNTVGTAEELGLVKVDYDMPAGGYGGWSAAAESMQTSNGGVFTMWND 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01660 548 CDD AP2 164 230 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 SUPERFAMILY DNA-binding domain 263 324 IPR016177 GO:0003677
Pumo11g01660 548 SUPERFAMILY DNA-binding domain 164 230 IPR016177 GO:0003677
Pumo11g01660 548 SMART rav1_2 165 234 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 SMART rav1_2 264 328 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 422 - -
Pumo11g01660 548 FunFam AP2-like ethylene-responsive transcription factor 263 324 - -
Pumo11g01660 548 FunFam AP2-like ethylene-responsive transcription factor ANT 164 230 - -
Pumo11g01660 548 Pfam AP2 domain 165 220 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 Pfam AP2 domain 265 314 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 Gene3D AP2/ERF domain 165 230 IPR036955 GO:0003700|GO:0006355
Pumo11g01660 548 Gene3D AP2/ERF domain 264 324 IPR036955 GO:0003700|GO:0006355
Pumo11g01660 548 ProSiteProfiles AP2/ERF domain profile. 264 322 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 ProSiteProfiles AP2/ERF domain profile. 165 228 IPR001471 GO:0003700|GO:0006355
Pumo11g01660 548 CDD AP2 263 324 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01660 Pumo-Chr11 47954217 47957140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01660 3 548 AP2-EREBP Transcription Factor Family AT1G51190 62.226 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo11g01660 AP2 2.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01660 K09285 - gmx:100788471 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01660 11 47954217 47957140 Pumo11g01660 11 47954217 47957140 ECH