Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01655 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCATCATCTCCTTCCAACAATCCAACATTCTATTTTCCTTCCAGTTATCATCATAACAACTACACAAGTGGCATATCTTCTACTCATCACTTCCAATCCTCTCCTCCTCCTCCTCAAAGAAAAGCACTTCCCCTCCTTCATCAAGGACATGAAGAAGAAGAAGAAGAAGATCTTGAATCTTCATTCAGTGCCATGGAAGTGGACAAGAAAAAGAAAGAGCTAAGTACATCATCTAGCTGCTGTTTGGATGAAGAGGATACTGTGGTTTTACACTTAGGGCTTCCAAGCACTATTAGTGCATCTGCTGATTTAGCTTCTTCAAGCCTTTACTCAACAGAGGCTTCAGACAACAAAGAAGAAAAAGAAGTAGTCACTGATGCTTCGGGGCTTCTGTCAAATAGAATTATCAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCCCTTTGTCTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCACTTAGGGGAACACAACCAACAGCTATGCTAAGACTCCCTTGCTATTGCTGTGCACCGGGTTGCAAGAACAACATCGATCATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCATTACAAAAGAAAGCATGGGACAAAGCCTTTTGTGTGTAGAAAATGTTGCAAATCATTTGCTGTGAGGGGTGACTGGAGAACTCATGAAAAGAATTGTGGGAAACGCTGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAAAGATCTCTTAAAGATCACATCAAGGCATTTGGATATGGACACACTGCTTATGGAAATGACTGCAACCTTGATCAAGATGATGATCAAGCTGGCTCTGAAATTGAACAAGAACATTAA 1026 0.4201 MTNSYTSNDLNFWLDLNSPCLLSSPSSSSSPSNNPTFYFPSSYHHNNYTSGISSTHHFQSSPPPPQRKALPLLHQGHEEEEEEDLESSFSAMEVDKKKKELSTSSSCCLDEEDTVVLHLGLPSTISASADLASSSLYSTEASDNKEEKEVVTDASGLLSNRIIRGQYWIPTSAQILIGPTQFACPLCLKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKSFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAYGNDCNLDQDDDQAGSEIEQEH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01655 341 FunFam Zinc finger protein WIP2 235 317 - -
Pumo11g01655 341 PANTHER ZINC FINGER PROTEIN WIP2 39 340 IPR043584 GO:0003700|GO:0010468
Pumo11g01655 341 Gene3D Classic Zinc Finger 243 320 - -
Pumo11g01655 341 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Pumo11g01655 341 SUPERFAMILY beta-beta-alpha zinc fingers 248 286 IPR036236 -
Pumo11g01655 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Pumo11g01655 341 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01655 Pumo-Chr11 47907164 47909706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01655 1 339 C2H2 Transcription Factor Family AT1G51220 55.556 1.34e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01655 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01655 - - gmx:100802239 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04036 4 81052716 81055032 Pumo11g01655 11 47907164 47909706 PCT