Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01654 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAGCATTAGCTATCCCTATAGTACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTCACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCGCATGCTCAGGAGAGTTCATACCCTTCAAATTCAAGCTTTTACAAGTTTGGACTATCTGATCAAGAGAATACTTCATACTATCGTTATGGTCATGGCTATGAGGTAAATCATCATGAACCACTGGTGGATGAGTATAGGAGACCTTCAGAGAACTCATTGACAGTCAATGAACAGACAGCAGCAGCAAGCTCAGAATGGGTTGAAGGCGGAAACACTGACACACGAGAGAATTCTATTGAATGTCCTCGAAGACATCATAGTAATTCAAGTGATTATCAGGTCATTTGGCAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACTCAAAGCCGTGGTCTCACCCATGAACAGATCTCCTCGCTTCCAGTGTCAAAGTACAAATGTGGGTTCTTCTTGAGGAAGAAGTCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTGTCACTTTGCCATGTAAACATGTCTATCATGCTAGTTGTGGGAACAGGTGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 747 0.419 MSWNPHMEVHYNSISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSDQENTSYYRYGHGYEVNHHEPLVDEYRRPSENSLTVNEQTAAASSEWVEGGNTDTRENSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTHEQISSLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRVTLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKHK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01654 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Pumo11g01654 248 SUPERFAMILY RING/U-box 190 243 - -
Pumo11g01654 248 MobiDBLite consensus disorder prediction 101 120 - -
Pumo11g01654 248 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Pumo11g01654 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Pumo11g01654 248 MobiDBLite consensus disorder prediction 101 130 - -
Pumo11g01654 248 Pfam Ring finger domain 195 236 IPR001841 -
Pumo11g01654 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pumo11g01654 248 SMART ring_2 196 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01654 Pumo-Chr11 47886265 47891369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01654 5 247 C3H Transcription Factor Family AT3G63530 43.373 5.36e-66 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01654 K19045 - gmx:100805963 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04032 4 81015770 81019893 Pumo11g01654 11 47886265 47891369 PCT