Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01642 ATGAGGAAGCCCGAGGCATCTGCAAAAAACAACATTAATAACAAGCTCAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACTGTGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCGCCAGAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCACGCTTACCAGGGAGAACTGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCATCCAACACCTCACCAAATGGAAGTGAGTCCTCATATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATATCCAAGATCAACAACATGCTGATTTTTTGCCTATGTTCAATTCATCATCTCCATCACCATCCATGCGTGCCACAGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGCCAGCTTCCGGTGGATTCTTCAACAGCACAGGGCCATGCTTCTCATCACAAAGTGGAGTTGACAACAAAGGGTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGTACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTAACATCCTTAATAACTGCAACATTAGCAACAATAAGAGAGCTGAAAATAGGGCTGGGGTGGAGAATTTGTTTCAAGAAGAGTTAACCATTGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATGCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 987 0.4184 MRKPEASAKNNINNKLRKGLWSPEEDDKLMNYMLNCGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPEEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNGSESSYEPNKDLNMAGFTTSNIQDQQHADFLPMFNSSSPSPSMRATVLNSIIDRLPMLEHGLNMPASGGFFNSTGPCFSSQSGVDNKGFYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSNILNNCNISNNKRAENRAGVENLFQEELTIGEWDLEELMKDVSCFPFLDFSNIQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01642 328 Gene3D - 72 143 - -
Pumo11g01642 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Pumo11g01642 328 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Pumo11g01642 328 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Pumo11g01642 328 FunFam Transcription factor MYB46 72 141 - -
Pumo11g01642 328 CDD SANT 21 65 IPR001005 -
Pumo11g01642 328 SMART sant 17 67 IPR001005 -
Pumo11g01642 328 SMART sant 70 118 IPR001005 -
Pumo11g01642 328 MobiDBLite consensus disorder prediction 122 142 - -
Pumo11g01642 328 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Pumo11g01642 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Pumo11g01642 328 PANTHER MYB DOMAIN PROTEIN 55 13 273 - -
Pumo11g01642 328 CDD SANT 73 113 IPR001005 -
Pumo11g01642 328 Gene3D - 15 71 - -
Pumo11g01642 328 FunFam MYB transcription factor 15 71 - -
Pumo11g01642 328 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Pumo11g01642 328 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01642 Pumo-Chr11 47737990 47740433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01642 1 324 MYB Transcription Factor Family AT3G08500 42.779 5.48e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g01642 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01642 K09422 - gmx:100786151 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04025 4 80912510 80915096 Pumo11g01642 11 47737990 47740433 PCT