Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01624 ATGAAGTTTTCTGTCTCACCTGTTGTTCATGTTGCTGTCCAGTGCAAGGTTGCATCGGATCTTCCCAAGCTTGTTGAAGGTCTTAAGCGATTGGCCAAATCTGATCCTATGGTTGTGTGTACTATAGAGGAGTCTGGAGAGCACATTGTTGCTGGTGCTGGAGAACTTCACCTTGAGATCTGTTTGAAGGACTTGCAGGAAGACTTCATGGGTGGAGCTGAGATTATTAAGTCAGATCCTGTTGTGTCCTTCCGTGAGACTGTCTTAGAGAGATCTTGCCGCACTGTGATGAGCAAGTCACCCAACAAGCACAACCGTCTTTACATGGAAGCCATTGATGATGGTCGTATTGGTCCAAGGGATGACCCCAAAGTTCGTTCCAAAATTTTGTCTGAAGAATTTGGTTGGGATAAGGATCTTGCAAAGATCATTCCTACTGCTAGGAGAGTCTTTTATGCTTCCCAGTTGACTGCAAAGCCTAGGCTTCTTGAACCTGTTTACCTGGTTGAAATACAGGCACCTGAGCAGGCTCTTGGTGGCATCTACAGTGTACTTAACCAGAAACCTGGGCATGTCTTTGAGGAAATGCAGCGGCCCGGTACCCCATTATACAACATTAAGGCATACCTTCCTGTCATTGAGTCCTTTGGGTTCTCAAGTACATTGAGGGCTGCAACATCCGGACAGGCTTTCCCCCAGTGTGTTTTTGACCACTGGGATATGATGTCATCTGATCCATTGGAGTCTGGATCACAAGCTGCACAGCTTGTTACGGATATTCGTAAGAGGAAAGGATTGAAGGAGCAAATGACATCGCTTTCAGAATATCAGGACAAGCTTTAA 843 0.4591 MKFSVSPVVHVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKPGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVTDIRKRKGLKEQMTSLSEYQDKL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01624 280 Gene3D - 90 144 IPR014721 -
Pumo11g01624 280 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 141 279 - -
Pumo11g01624 280 Pfam Elongation factor G C-terminus 161 248 IPR000640 -
Pumo11g01624 280 Gene3D - 160 280 - -
Pumo11g01624 280 CDD aeEF2_snRNP_like_IV 79 168 - -
Pumo11g01624 280 FunFam Translation elongation factor 2 6 83 - -
Pumo11g01624 280 CDD EF2_snRNP_III 7 79 - -
Pumo11g01624 280 Pfam Elongation Factor G, domain III 7 69 IPR041095 -
Pumo11g01624 280 Gene3D Elongation Factor G (Translational Gtpase), domain 3 6 83 - -
Pumo11g01624 280 SMART EFG_C_a 161 250 IPR000640 -
Pumo11g01624 280 FunFam Translation elongation factor 2 160 280 - -
Pumo11g01624 280 CDD eEF2_snRNP_like_C 164 242 - -
Pumo11g01624 280 SUPERFAMILY Ribosomal protein S5 domain 2-like 82 163 IPR020568 -
Pumo11g01624 280 SUPERFAMILY EF-G C-terminal domain-like 164 276 IPR035647 -
Pumo11g01624 280 SUPERFAMILY EF-G C-terminal domain-like 4 80 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01624 Pumo-Chr11 47605251 47606246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01624 141 280 Eukaryotic Initiation Factors Gene Family AT1G56070 85.714 2.96e-80 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01624 K03234 - ssl:SS1G_01341 333.954