Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01623 ATGGAATCTGATCATCATGATCATCAAGCTGCAGCATCAGAAAATCCCTCTGATGGAGAGGAGCAAGGTGCAAGTCACGTGACATCGAGGTCCTACGAGTGCAACTTCTGCAAGAGGGGCTTCTCTAATGCACAAGCACTAGGGGGACACATGAACATCCACAGAAAAGACAAAGCCAAGCTCAAGCAACAACAATCTTCAAACCAAACTCAACAGCAGGATCAGGCCAAGTCTGGTGAAGAGATCAGCAACAAACCAAAATGGAATTGGAATGTGTCTCAACAAGAACATGCCTCCTCCAGAGCCATTCACACAAGGCAGCTTCCACTCTTTGCCGAATCACCAAATAGCAGTGAAACACAAAAGCCACAAGGTCAAAGTCAAACTACTACTGAACAAACTTTGTTATCTAACCAAGATTCCTCAGCGGAGTTAGACCTTGAACTGAGACTAGGACCTGAACCACAGGATTCATCATCAGCAGAAACGGGTACAAGAAATTTTTTTTGA 510 0.4471 MESDHHDHQAAASENPSDGEEQGASHVTSRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQTQQQDQAKSGEEISNKPKWNWNVSQQEHASSRAIHTRQLPLFAESPNSSETQKPQGQSQTTTEQTLLSNQDSSAELDLELRLGPEPQDSSSAETGTRNFF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01623 169 MobiDBLite consensus disorder prediction 110 144 - -
Pumo11g01623 169 MobiDBLite consensus disorder prediction 15 30 - -
Pumo11g01623 169 MobiDBLite consensus disorder prediction 63 102 - -
Pumo11g01623 169 PANTHER OS07G0101800 PROTEIN 14 155 - -
Pumo11g01623 169 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Pumo11g01623 169 MobiDBLite consensus disorder prediction 1 30 - -
Pumo11g01623 169 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Pumo11g01623 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Pumo11g01623 169 Pfam C2H2-type zinc finger 32 56 - -
Pumo11g01623 169 Gene3D Classic Zinc Finger 18 91 - -
Pumo11g01623 169 MobiDBLite consensus disorder prediction 48 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01623 Pumo-Chr11 47543681 47544190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01623 29 161 C2H2 Transcription Factor Family AT3G53820 32.414 4.77e-18 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01623 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01623 - - gmx:102667172 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01623 11 47543681 47544190 Pumo11g01623 11 47543681 47544190 ECH