Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01615 ATGGGGGAAGAGGTGAAGACGAGCGAGTACGATGAAGAGCGCGTGATGGACTGGGAGATGGGTCTTCCCACCGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATCCCGCCGGAGCTGGCCTCGGCCTTCAGCATCTCGCCGGAGCCCCACCGCACCCTCCTCGACGTCAACCGCGCCTCGCGGAACACGCTCTCCACGCTCCGCGGCGGCGGGAGCGTGCACCAGGCCTTCTCCTCCAACAACAACAACAACCACCACTACGACGAGGAGGACGACACCGATCGCGACGGCTCGGGGTCGGATTCCCGGAAGCAGCGGAAGATCGAGTGCGCGGCGGAGGAGGCGGACTCGGCGGAGCGGACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTTCACAAGCGGTTCGTGGACGTGGTGGGCCACCTCGGGATCAAGAACGCCGTTCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACTCGCGAGAATGTCGCGAGTCATCTCCAGAAGTATCGTCTCTACCTGAAGCGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTTCTTCGGATCAGTTATTTGCTTCCACACCTGTGCCTCAGAGTTTGCATGACTCTGCTCCTCCCAGTGCCCATTCCCATGGCCATCTACCTGTTCCCATGATGTCCATGCCATATCCACCTCCCATGATGTCCATGCCTGTCCTCGGCATGCCCCATGCCCATGGCCACATGGGCATCCCCATGCCTACTTCCTCTGCCACCTCAGCTTATCATCCTTATAACATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGA 849 0.6007 MGEEVKTSEYDEERVMDWEMGLPTANDLTPLSQPLIPPELASAFSISPEPHRTLLDVNRASRNTLSTLRGGGSVHQAFSSNNNNNHHYDEEDDTDRDGSGSDSRKQRKIECAAEEADSAERTAVKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSAPPSAHSHGHLPVPMMSMPYPPPMMSMPVLGMPHAHGHMGIPMPTSSATSAYHPYNMLHQRDWPHLAPNDK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01615 282 MobiDBLite consensus disorder prediction 85 122 - -
Pumo11g01615 282 MobiDBLite consensus disorder prediction 66 84 - -
Pumo11g01615 282 MobiDBLite consensus disorder prediction 66 122 - -
Pumo11g01615 282 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 251 IPR044841 GO:0003700|GO:0006355
Pumo11g01615 282 MobiDBLite consensus disorder prediction 187 221 - -
Pumo11g01615 282 Gene3D - 122 185 - -
Pumo11g01615 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 182 IPR017930 -
Pumo11g01615 282 Pfam Myb-like DNA-binding domain 130 178 IPR001005 -
Pumo11g01615 282 FunFam Two-component response regulator 122 185 - -
Pumo11g01615 282 MobiDBLite consensus disorder prediction 187 213 - -
Pumo11g01615 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 127 179 IPR006447 GO:0003677
Pumo11g01615 282 SUPERFAMILY Homeodomain-like 124 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01615 Pumo-Chr11 47493845 47495960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01615 1 252 G2-like Transcription Factor Family AT3G46640 57.609 2.44e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo11g01615 Myb_DNA-binding 8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01615 - - gmx:100816634 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01615 11 47493845 47495960 Pumo11g01615 11 47493845 47495960 ECH