Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01613 ATGAATTTGGACACGCAACCCGGAACGGCGTCGTATTGGTGCTACAGCTGCACGCGTTTCGTGCACCTCTCTGTCCAAGCCACCATCGCCTGTCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGCGCCGCCGCCGAAGCCTCGCCGCGCCACCCTCTAAGTCCCTTCCCCGACGATCCTCTCTCTCTCCGGCGACAGGGCTTCCGCCGCCGCAGGAGAGATGCCGCCGGCAACCGCTCCCCCTTCAACCCTGTTATTGTCCTCCGCGGCCCCGGCGACGACTCCGCCGACGCCGACCACGACGGCTCTAGCACGTTCGAGCTCTTCTACGACGACGGCGACGGCACCGGCCTCCGCCCCCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCCGGCTTTGACCGCCTCCTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCGAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGAGAGACTCATGTCGAGACCGACGCGCACTGCGCCGTGTGCAAGGAAGCGTTTGAGCTCCACGCGGAGGCGCGTGAGTTGCCGTGCAAGCACATTTACCACTCCGATTGCATCCTCCCGTGGCTCTCCATGCGGAACTCGTGCCCGATCGACGAGGAAGCGATAGGGTTAACGATTTGGAGGCTCCCCGGCGGCGGATTCGCCGTGGGAAGATTCTCCGGTGGCCGGAGAACCGGCGAGAATCATTTCCCGGTGGTGTACACGGAGATGGACGGAGGACTTAACACAAACGGTGCTCCTAGGAGAATCTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGTTTTGGTAGAGTTATTCGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGGAACTCTTCTTCTTCTTCTGAACATGATGGGTCTGTGAGTAGAAGCCGTAGTCACGTGAGTTCAGTCTTCAATAGAAGCTCGCGGAGACAAAGCAGGACTTGGGTTATGGATGATTAA 1035 0.5971 MNLDTQPGTASYWCYSCTRFVHLSVQATIACPHCQSGFVEEIRAAAEASPRHPLSPFPDDPLSLRRQGFRRRRRDAAGNRSPFNPVIVLRGPGDDSADADHDGSSTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGETHVETDAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPIDEEAIGLTIWRLPGGGFAVGRFSGGRRTGENHFPVVYTEMDGGLNTNGAPRRISRSVRSNRVRESRGFGRVIRNFFSFFGRIGSRNSSSSSEHDGSVSRSRSHVSSVFNRSSRRQSRTWVMDD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01613 344 SUPERFAMILY RING/U-box 162 227 - -
Pumo11g01613 344 SMART ring_2 182 222 IPR001841 -
Pumo11g01613 344 Pfam Ring finger domain 181 221 IPR001841 -
Pumo11g01613 344 MobiDBLite consensus disorder prediction 306 330 - -
Pumo11g01613 344 MobiDBLite consensus disorder prediction 71 100 - -
Pumo11g01613 344 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Pumo11g01613 344 Pfam Protein of unknown function (DUF1117) 226 334 IPR010543 -
Pumo11g01613 344 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Pumo11g01613 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 221 - -
Pumo11g01613 344 FunFam E3 ubiquitin-protein ligase RING1-like 144 226 - -
Pumo11g01613 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 227 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01613 Pumo-Chr11 47467788 47468874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01613 121 221 C3H Transcription Factor Family AT5G01980 45.545 2.04e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01613 K11982 - gmx:100792874 542.732