Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01612 ATGAGTTTTGTCTTCCGAGGGAGTAGGGGAGATATTGAAAGTGGCTTTTCAGATTATGTTCCTGAAAGAACCTTGATGCGGGTTCATCCAGCTCGGCCAGTTAATGGAAATTCTCTAGCTTTTCTTATCACAGTTATTTTGATATTCATGATATTAAACTCCCCTCAGATGTTACATCATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATACTGAACTTCGTCTTCACATGCCACCATCGATTGCAATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGACTATGACACTTTGAGAGCTCTGGATTCTGATACAACTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTACAAAGTTCCAGTCCCACCAAAAGATGGCTCAGCTGGTTTGGCATCCTCTTCAGGTGCAGCTGAGATTAAACAAGAATCTGGAGGAACAGAGGCAGGTATCAAAGGTCCAGAAGATGAGCTAACATGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTCCGGCAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCCGGAAGTGGAGGAAACAGGGAGAGCGACTCCGATGGTTCAGATATTGCCTAG 825 0.4545 MSFVFRGSRGDIESGFSDYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNSPQMLHHFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTTSSTRSMTEEEINALPIHTYKVPVPPKDGSAGLASSSGAAEIKQESGGTEAGIKGPEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRIGSGSGGNRESDSDGSDIA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01612 274 CDD RING-H2_PA-TM-RING 211 253 - -
Pumo11g01612 274 SMART ring_2 212 252 IPR001841 -
Pumo11g01612 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Pumo11g01612 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 259 IPR013083 -
Pumo11g01612 274 MobiDBLite consensus disorder prediction 176 204 - -
Pumo11g01612 274 PANTHER TARGET OF ERK KINASE MPK-1 1 258 - -
Pumo11g01612 274 SUPERFAMILY RING/U-box 207 257 - -
Pumo11g01612 274 Pfam Ring finger domain 211 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01612 Pumo-Chr11 47459552 47466989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01612 1 274 C3H Transcription Factor Family AT3G55530 70.036 2.38e-127 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01612 K16283 - gmx:100805406 464.536