Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01604 ATGGAGTCAAACTTTCCCGGTGCTGATCACCTGTTTGGCGAAGACGAGGACATACCGTATCTCTCTGACTCGCTTGCTTTTCCAACGATGGATCCTTCACCTGAAGACAACGACTTCGCAGAAACTGCCAAGTTCATTAGCCAGATCCTCATGGAAGAGAACGTTGAACAGAGGCCATTCTACGACTCTCTCTCCTTGCAAGTTACTGAGAAATCCTTCTACGATGCTCTCGCCGGCAACCTACCTCTTTCCCCCAATCAACACCCTCTTGTTTTCAGTCCTGAAGCTGAAACCACCACCAGCAGTAGCAACAACAATTTTTCAGATGAAAATTCTCGTGAGTTTAAGCTCCCTTCTCCAGATTCTCTTTCTGTTTCTGCTTTTCAGTTTTCTCAACCACCGCCTTCAGTTACTGTTAATCATGGAGTCTCGGATTTGGATTCTTCTATTGCCAAACTCTTAGCACAGAACATTTTCAATGATGTTGATTCTGTTTCTCAATTTAGGAGAGGCTTGGAGGAAGCTAGCAAATTTCTTCCTCCGGGGCCTAACCTTGTAACTGGTCTAGATTCATACGGAGAACAACCAATCAATACATTTGGAGAGAATTCCAATGGGTTGTTGAAGGGTAGTAGGAAGAATCATGAGCGCGAAGAGAGAGGCAGCAGAGAAGAAGCAGGGAGAAGTAACAAGCAATCAGCACTTGCCCTTGTTGATGAGAGTGACTTGTCAGATGCTTTTGATCGGGTGTTGCTTAATGAGGGAAACTTGTGTAGTGAACTCATTTGTTTGCAGAGTGGAACAGTGAGGGTTGAGGAACCAAATGGAGGGAAGGGTCGTTCAAAGAAACAAGGAAGGAATAAGGAAACAGTGGATTTGAGGAATCTTCTCCTCATGTGTTCACAATCTGTGTTTGCCAATGACAGTAGAACTGCCAATGAATTACTAAAGCAGATTAGGCAGCACTCTTCTCCCTCTGGGGATGCATCACAGAGGTTGGCTCACTACTTTGCCAATGGCCTCGAGGCACGCTTGGTTGGGGATGGTTCTGGTATCCTTGGTCTGGCTACCTACTTGCTTAACCTGCAGAACAGAATAAAGACTCGCTTGATATTCCAACGATGGATCCTTCACCTGAAGACAACGACTTCTCAGAAACTGCCAAGTTCATTAGCCAAATCCTCATGGAAGAGAACGTTGAACAGAGGCCATTCTACGACTCTCTCACCTTGCAAGTTACTGAGAAATCCTTCTACGACGCTCTCGCCGGCAACCTACCTCTTTCCCCCAATCAACACTTCCTTAGTTCCCATTCCCGAAGCTAAAACCACCAACAATCTGAAGCTCCTTTCTCCAGATTCTCTTTCTCAACCACCGCCTTCAGTTACTGTTAGTGATTTGGATTCTTCTATTGCCAAACTCTTGGCACAGAATATTTTCAATGATGTTGATTCTGTTTCCCAGTATAGGAGAGGCTTGGAGGAAGCTAGTAAATTTCTTCCTCCAGGGCCTAACCTTGTAACTGGTGTACATTCAAAGGGAGAACAAGCAATCAATAAATTTGGAGAGAATTCTAATGGCTTGTTGAAGGGTAGGAAGAATCGCGAGCGCCAAGAGACGGACACCACAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGGAGAAGTAACAAGCAATCAGCACTTTCCCTTGTTGATGAGAGTGACTTGTCAGAAGCTATTGATCGGGTGTTTGTAAACGAGGAAAACGTGTGTAGTGAACACAGTTATTTGCAGAGTGGAGCAGTGAGAGCTAAGGAGCAAGATGGAGGGAAGGGTCGTTCAAAGAAACAAGGGAGGAAGAAGGAAACAGTGGATTTGAGGAATCTTCTGTTGATGTGTTCACAATCTGTGCATGCCAATGACAACAGGACTGCCAATGAATTGCTAAAGCAGATTAGGCAGCACTCTTCTCCCTCTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATAGCCTCGAGGCACGCTTGGTTGGCTTGCTGTATGCAACTGGTGAAGCTTATTTTGCTGGTTACATTGTTTCAGGTTCTGGTATCCTTGGTGGCTACCTACTTGCTTAA 2106 0.453 MESNFPGADHLFGEDEDIPYLSDSLAFPTMDPSPEDNDFAETAKFISQILMEENVEQRPFYDSLSLQVTEKSFYDALAGNLPLSPNQHPLVFSPEAETTTSSSNNNFSDENSREFKLPSPDSLSVSAFQFSQPPPSVTVNHGVSDLDSSIAKLLAQNIFNDVDSVSQFRRGLEEASKFLPPGPNLVTGLDSYGEQPINTFGENSNGLLKGSRKNHEREERGSREEAGRSNKQSALALVDESDLSDAFDRVLLNEGNLCSELICLQSGTVRVEEPNGGKGRSKKQGRNKETVDLRNLLLMCSQSVFANDSRTANELLKQIRQHSSPSGDASQRLAHYFANGLEARLVGDGSGILGLATYLLNLQNRIKTRLIFQRWILHLKTTTSQKLPSSLAKSSWKRTLNRGHSTTLSPCKLLRNPSTTLSPATYLFPPINTSLVPIPEAKTTNNLKLLSPDSLSQPPPSVTVSDLDSSIAKLLAQNIFNDVDSVSQYRRGLEEASKFLPPGPNLVTGVHSKGEQAINKFGENSNGLLKGRKNRERQETDTTEEEEEEEGGGGRSNKQSALSLVDESDLSEAIDRVFVNEENVCSEHSYLQSGAVRAKEQDGGKGRSKKQGRKKETVDLRNLLLMCSQSVHANDNRTANELLKQIRQHSSPSGDASQRLAHYFANSLEARLVGLLYATGEAYFAGYIVSGSGILGGYLLA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01604 701 Pfam GRAS domain family 293 353 IPR005202 -
Pumo11g01604 701 Pfam GRAS domain family 620 674 IPR005202 -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 209 227 - -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 600 615 - -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 90 118 - -
Pumo11g01604 701 ProSiteProfiles GRAS family profile. 611 701 IPR005202 -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 198 235 - -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 592 615 - -
Pumo11g01604 701 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 226 355 IPR005202 -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 516 566 - -
Pumo11g01604 701 ProSiteProfiles GRAS family profile. 284 437 IPR005202 -
Pumo11g01604 701 MobiDBLite consensus disorder prediction 91 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01604 Pumo-Chr11 47341922 47348600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01604 469 675 GRAS Transcription Factor Family AT2G29060 41.475 1.10e-33 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo11g01604 GRAS 9.4e-12 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01604 - - gmx:100795855 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01604 11 47341922 47348600 Pumo4g03996 4 80604157 80612352 PCT