Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01602 ATGGATAAGGAGGAACTAGCTATGGTACCTCTACTCCAGAAGCCAAAGCGACCTGAGGTTGTACAGCGCCGAATACGTAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGGTGGCGTGATGTTAAGCTTTGTGCTTTTGATCATGCAAAGCATCGGACATATGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAAAATATCCCCTCAACAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCCACGCATATTGGTCCCAGCAACAGACTAAGCCACAGCACAAGCAGCATCCAGAAACTGAAACTGTCTTCTCCTTTAATAATAAGGGCCAGGGTCATGGGTTGTCAGCAGCAAGTGGCCATGTGGATGAGGGTGTTTTGGTTTCTGACTTTTGTTATTAG 465 0.4624 MDKEELAMVPLLQKPKRPEVVQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFDHAKHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLVAHAYWSQQQTKPQHKQHPETETVFSFNNKGQGHGLSAASGHVDEGVLVSDFCY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01602 154 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 80 IPR017930 -
Pumo11g01602 154 Pfam Myb-like DNA-binding domain 26 75 IPR001005 -
Pumo11g01602 154 SUPERFAMILY Homeodomain-like 27 108 IPR009057 -
Pumo11g01602 154 CDD SANT_TRF 27 77 - -
Pumo11g01602 154 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 120 IPR031105 -
Pumo11g01602 154 Gene3D - 15 118 - -
Pumo11g01602 154 SMART sant 25 78 IPR001005 -
Pumo11g01602 154 ProSiteProfiles Myb-like domain profile. 21 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01602 Pumo-Chr11 47311710 47312940 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo11g01602 Myb_DNA-binding 3.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01602 - - vun:114169292 255.373