Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01585 ATGGAGGGCGAGAACGCGAGCAAGGTGATTGAGTTGGTGAATGAGATAGCCAGCATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGCGGCTGAAGCTTCTGATCCCGATGTTCGAGGAGATTAGGGACATGAAGAACGCGATTCCCGAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCAAAGGAACTCCTCAGATTCGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGAAATTATGAATAAATTCTACGAGGTGACAGCTCAGTTGGAACAGTCGTTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTGTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAGGTTGTATGAGGATATGTTGTCCCTTTATAACAACAGCAGTGATGCAGCTACATATCCATCTGTTTTAAGTCAATTAGCTGAAAAGTTGCACTTGATGGGAATAGCTGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAACAAGTGGTGGGGATCCAGGGGCACGCATTGAGAAAATGTCAATGTTATTGAAGAAGATAAAGGATTACGTGCAGACAGAAAATCTAGACAAGGATGATAATTTAGGAGGAAAAGGCATTTTCTCAAAAGTCTATGGACTTGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCAATTTCCCTGGAATTAATGAAGGACCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTGCTTGTATTGAGAAGTGGTTGCAAGCAGGGCACGGGACATGCCCCAAAACACAGCAGACTCTCACTAGTACTGTTCTCACACCTAACTATGTCTTACGAAGTCTCATAGCACAGTGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCTAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCCGCTGAGCGAAGTAAAATTGATAGTCTTCTCCAAAAACTCACATTGGGCAGTCCTGAAGACCAGAGATCAGCCGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAACCGCGTTGCCATTGCTGAAGCTGGTGCAATACCTTTCCTTGTCGGTCTCTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCACTCCTAAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTTTCTTCGGGAGCAGTTCCTGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACGATTGGATCTTTAGGAGCCATACCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGAAAGGCAGTGAGAGCTGGCGTTATTCCCACCCTGATGCGACTACTGACTGAACCTAGTGGGGGAATGGTGGATGAAGCATTAGCTATTTTGGCAATATTGGCTAGCCATCCTGAAGGGAAGGCTACCATTAGAGCTTCAGAGGCAGTGCCAGTTTTAGTAGAGTTTATTGGGAATGGCTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCACCTCTGTTCGGGTGATCAACAATATCTAGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAATTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGGACAATTGCTAGAGCGTATGAGCAGGTTAGTTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGATACCCAACAACCACCACCTTTGATTACTAACCCTGATGATTCCTAA 1989 0.4635 MEGENASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKNAIPEDTSKAVLAFKEALESAKELLRFGSEGSKLYLVLERDEIMNKFYEVTAQLEQSLGGISYDKLDISDEVKEQVELVVAQFRRAKGRVDEPDVRLYEDMLSLYNNSSDAATYPSVLSQLAEKLHLMGIADLTQESLALHEMVATSGGDPGARIEKMSMLLKKIKDYVQTENLDKDDNLGGKGIFSKVYGLGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERACIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASAYSPAERSKIDSLLQKLTLGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPFLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKATIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAGQLLERMSRLVEQQQEVPTQTETQAQNEDTQQPPPLITNPDDS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01585 662 PANTHER U BOX DOMAIN-CONTAINING 25 628 - -
Pumo11g01585 662 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Pumo11g01585 662 MobiDBLite consensus disorder prediction 330 348 - -
Pumo11g01585 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Pumo11g01585 662 SUPERFAMILY RING/U-box 246 331 - -
Pumo11g01585 662 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Pumo11g01585 662 CDD RING-Ubox_PUB 256 308 IPR045210 -
Pumo11g01585 662 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Pumo11g01585 662 FunFam RING-type E3 ubiquitin transferase 255 328 - -
Pumo11g01585 662 MobiDBLite consensus disorder prediction 328 349 - -
Pumo11g01585 662 Gene3D - 339 650 IPR011989 -
Pumo11g01585 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Pumo11g01585 662 FunFam RING-type E3 ubiquitin transferase 529 647 - -
Pumo11g01585 662 FunFam RING-type E3 ubiquitin transferase 338 489 - -
Pumo11g01585 662 CDD MLKL_NTD 7 135 - -
Pumo11g01585 662 MobiDBLite consensus disorder prediction 626 662 - -
Pumo11g01585 662 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Pumo11g01585 662 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Pumo11g01585 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Pumo11g01585 662 Pfam Neurochondrin 516 601 IPR008709 -
Pumo11g01585 662 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Pumo11g01585 662 SUPERFAMILY ARM repeat 353 629 IPR016024 -
Pumo11g01585 662 SMART arm_5 423 463 IPR000225 GO:0005515
Pumo11g01585 662 SMART arm_5 546 586 IPR000225 GO:0005515
Pumo11g01585 662 SMART arm_5 588 628 IPR000225 GO:0005515
Pumo11g01585 662 SMART arm_5 505 545 IPR000225 GO:0005515
Pumo11g01585 662 SMART arm_5 464 504 IPR000225 GO:0005515
Pumo11g01585 662 SMART arm_5 382 422 IPR000225 GO:0005515
Pumo11g01585 662 MobiDBLite consensus disorder prediction 627 662 - -
Pumo11g01585 662 Gene3D - 4 114 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01585 Pumo-Chr11 47149315 47154102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01585 1 649 U-box Gene Family AT3G46510 70.633 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01585 - - gmx:100812160 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01585 11 47149315 47154102 Pumo11g01585 11 47149315 47154102 ECH