Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01573 ATGTCTGCAGCTCTCGATATGACGCTCGACGACATCATTAAGAACAACAAAAAATCTGGATCCGGAAGCTCCCGTGGCCGGACCCGACCCTCCGGATCCGGAACCGGACCTTCTCGCCGGTTCCCCAACCGCGCCGCCAACCGCGCCGCACCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGTTCGTGCATCTTCCATAGAAACTGGGACCAAGCTCTACATTTCCAACTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTGCTGAAGTCGGTGACCTGAAACGGCATGCGGTTCATTACGACAGGAGTGGCAGATCGAAGGGTACGGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAACGTTCAATTAGATGGGAAACCAATGAAGATAGAGATCGTGGGAACAAACATTTCAACACCTGGTGTAGCTCCTGCTCCTAACGGAGCTATTGGAAACTTGAATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCACTAAGAAGGCCAGGAGGAAGAGGGCAAGGCATTCGAAGGGATCGAGGACGGGGAAGAGGTCGTGGTGGAGGAGGTCGTGGCGAAAAGTTATCATGCAGATGA 699 0.525 MSAALDMTLDDIIKNNKKSGSGSSRGRTRPSGSGTGPSRRFPNRAANRAAPYATAKAPEATWQHDLYADQHVAAAGYPAQGVRASSIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAPNGAIGNLNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKLSCR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01573 232 SMART rrm1_1 92 164 IPR000504 GO:0003723
Pumo11g01573 232 MobiDBLite consensus disorder prediction 206 232 - -
Pumo11g01573 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Pumo11g01573 232 Gene3D - 74 230 IPR012677 -
Pumo11g01573 232 MobiDBLite consensus disorder prediction 187 232 - -
Pumo11g01573 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Pumo11g01573 232 FunFam THO complex subunit 4 84 231 - -
Pumo11g01573 232 CDD RRM_THOC4 91 165 - -
Pumo11g01573 232 MobiDBLite consensus disorder prediction 1 55 - -
Pumo11g01573 232 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 225 - -
Pumo11g01573 232 SUPERFAMILY RNA-binding domain, RBD 81 197 IPR035979 GO:0003676
Pumo11g01573 232 MobiDBLite consensus disorder prediction 14 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01573 Pumo-Chr11 47014658 47017277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01573 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.47e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01573 K12881 - gmx:100775827 305.449