Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01571 ATGGCAGCGCTCTTTGTTTCAACTTACCAAGACTTTCTATGTGTGCGCCATCATTCATCAACCAAGTTGTTTGTTGCGGGGCTTTCTTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACACAGTGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGGAAATCCAGAGGGTATGGATTCGTGCAGTTCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGGCAGATACTGGATGGCAGGCGCATTCGGGTGAGTTATGCACACAAAGGCTAG 303 0.4488 MAALFVSTYQDFLCVRHHSSTKLFVAGLSYDTNEPILRDAFGQHSEIIEVKVICDHVTGKSRGYGFVQFVSETTAAAARKEMNGQILDGRRIRVSYAHKG 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01571 100 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 7 100 - -
Pumo11g01571 100 SUPERFAMILY RNA-binding domain, RBD 18 99 IPR035979 GO:0003676
Pumo11g01571 100 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Pumo11g01571 100 SMART rrm1_1 22 95 IPR000504 GO:0003723
Pumo11g01571 100 Gene3D - 15 100 IPR012677 -
Pumo11g01571 100 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 93 IPR000504 GO:0003723
Pumo11g01571 100 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 17 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01571 Pumo-Chr11 46993757 46995890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01571 20 99 Eukaryotic Initiation Factors Gene Family AT4G34110 41.250 5.19e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01571 K13195 - gmx:100306540 177.948