Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01565 ATGAAGAGAGGCAGAGATAATTGTTTGATGTTACTAGCCAAAGTTGGAGAAACCCCATCAAGAGAGAGGGTTTTAAAGGGTGGTGATTTCAAGTGCAAGACTTGTAACAGGCAATTCCATTCGTTTCAAGCTCTTGGGGGCCACCGAGCCAGCCACAAGAAAATAAAGCTCATGGCTTCAAACCTTTCGTGTTCGACCTTGACACCAAAAATGCACCAGTGCCCCATTTGTGGGATTCAGTTTGAGATTGGACAAGCACTGGGAGGGCACATGAGAAAACATAGAGCTGCATTGAATGATGGTTTGATAGTTCATGATCATGCCGTGCCAAAATCTAATGGCACTAAGAGGCTTCGTTTGTGCTTGGACTTGAACTTGGCACCGTACGAGAATGATCTCAACCTCAGTTTAAGGACACCTGTTTTAAATTTGTTCATTTGA 441 0.4376 MKRGRDNCLMLLAKVGETPSRERVLKGGDFKCKTCNRQFHSFQALGGHRASHKKIKLMASNLSCSTLTPKMHQCPICGIQFEIGQALGGHMRKHRAALNDGLIVHDHAVPKSNGTKRLRLCLDLNLAPYENDLNLSLRTPVLNLFI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01565 146 SMART c2h2final6 72 94 IPR013087 -
Pumo11g01565 146 SMART c2h2final6 30 52 IPR013087 -
Pumo11g01565 146 Pfam C2H2-type zinc finger 72 96 - -
Pumo11g01565 146 Pfam C2H2-type zinc finger 30 54 - -
Pumo11g01565 146 PANTHER ZINC FINGER PROTEIN ZAT5 7 131 - -
Pumo11g01565 146 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Pumo11g01565 146 Gene3D Classic Zinc Finger 11 99 - -
Pumo11g01565 146 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Pumo11g01565 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Pumo11g01565 146 SUPERFAMILY beta-beta-alpha zinc fingers 30 94 IPR036236 -
Pumo11g01565 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01565 Pumo-Chr11 46923482 46924390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01565 1 137 C2H2 Transcription Factor Family AT2G28710 44.872 1.56e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01565 zf-C2H2_6 6.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01565 - - gmx:112998408 254.218