Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01563 ATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAGAAGGCTCAAGAGAAAAAACGTGCAGCATCTGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTGTCCTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGGGCTTAAACTTAATTGATGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTGTGCCAGAAGAGAACAACATTTATAATGATAATAATAATCTGCAACCTGTGTATGAAGGGCACAGTGAAGAGGGATGCAACTTCTCTTGTCCACCACCAATGATGATGCCTTCTCCATCATGGGATCAGTACAATGTTTCTTCTCACCCCCTATGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCCTGCTATGAACAAGGCAACGCATTTCTAACTGGTTAA 588 0.4065 MDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKAQEKKRAASASSPVSSSCQSSLSSNNHVVDSHASKEVGEESFYDTGGYDDMMGLNLIDGEKGYSMDDIWKDIVVPEENNIYNDNNNLQPVYEGHSEEGCNFSCPPPMMMPSPSWDQYNVSSHPLWVMDEEESNKMLFPTLSDQYFSCYEQGNAFLTG 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01563 195 MobiDBLite consensus disorder prediction 46 69 - -
Pumo11g01563 195 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 49 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo11g01563 195 Gene3D - 1 62 - -
Pumo11g01563 195 MobiDBLite consensus disorder prediction 33 74 - -
Pumo11g01563 195 CDD SANT 2 34 IPR001005 -
Pumo11g01563 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Pumo11g01563 195 ProSiteProfiles Myb-like domain profile. 1 34 IPR001005 -
Pumo11g01563 195 SMART sant 2 36 IPR001005 -
Pumo11g01563 195 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Pumo11g01563 195 Pfam Myb-like DNA-binding domain 2 33 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01563 Pumo-Chr11 46873990 46875772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01563 1 191 MYB Transcription Factor Family AT3G46130 43.299 2.15e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo11g01563 Myb_DNA-binding 6.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01563 K09422 - gmx:100776886 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01563 11 46873990 46875772 Pumo4g03955 4 80154646 80156502 PCT