Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01561 ATGCCGATTTCTAGAATTGCCATTGGAAATCCTTCAGAGTTTGGCCAAGCTGATGCACTCAAGGCTGCTCTTGCTGAGTTCATCTCAATGCTAATATTTGTCTTTGCAGGAGAAGGCTCTGGCATGGCATATAACAAACTCACAAACAATGGTTCAGCAACACCAGCTGGGGTGGTGGCAGCATCACTGTCTCATGCATTTGCTCTTTTTGTTGCGGTTTCTGTTGGTGCTAACATCTCAGGTGGGCATGTTAACCCTGCTGTCACATTTGGTGCCCTAATTGGTGGCCACATAACCCTCCTCAGAGGCATTTTGTACTGGATTGCTCAGTTGCTCGGCTCTGTAGTGGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGATTGGAAACATCTGCGTTCTCATTGTCTCCTGGGGTGGGAGCTGCAAATGCACTTGTTTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCTACTGCAGTGGATCCAAAGAAGGGTAACCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATTGTGGGTGCCAACATCCTGGCAGGTGGTGCCTTTGATGGTGCATCCATGAACCCAGCAGTCTCTTTTGGACCTGCTGTTGTTAGCGGTACATGGACTAACCACTGGGTCTATTGGGCTGGCCCATTAATTGGTTCCGCTATTGCTGCGGTTGTGTACGAGACTTTCTTTATCACCCCAAACTCTTATGAACATTTACCCGTCACAGATTATTAG 759 0.4677 MPISRIAIGNPSEFGQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGVVAASLSHAFALFVAVSVGANISGGHVNPAVTFGALIGGHITLLRGILYWIAQLLGSVVACLLLKFATGGLETSAFSLSPGVGAANALVFEIVMTFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSGTWTNHWVYWAGPLIGSAIAAVVYETFFITPNSYEHLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01561 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Pumo11g01561 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Pumo11g01561 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo11g01561 252 SUPERFAMILY Aquaporin-like 18 244 IPR023271 -
Pumo11g01561 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Pumo11g01561 252 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01561 Pumo-Chr11 46859043 46860173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01561 1 252 Major Intrinsic Protein MIP AT4G01470 78.968 7.83e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01561 K09873 - gmx:100777419 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03954 4 80152021 80153381 Pumo11g01561 11 46859043 46860173 PCT