Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01557 ATGTCTTCTGATTCTGCGAATGACCTTGCGAAATGGAAACTAGAAGAAGTTATTTCAATTATTATAGTGTGTGTCATCTTTCTTACACTGAGTGATTGCTTCGGCATGTTCAAGCGTCTGATGTGCAGAGTTTTCTGTGGAAGAAACCAGGTTGAAAGGCGGCTTCTAGATGAGTCTCTTCCCGATGACCCTTCTCTGCAGCTTCAAAGCCGTGGGTTGGAATTCTCTGTGGTGCAGTCTCTTCCCACGTCTCAGTTCAAGAAAAACGAGGGAGAACAAGACAAGGCAATTAATAACGTGGAGTGTGCCATTTGCCTTGGAGAGTTTGAGGAAGGGGAGTGGCTGAAACATCTTCCACACTGTACCCACAGTTTCCATGTTTCATGCATTGACACGTGGTTTCAGTCTCACTCAAATTGTCCTCTTTGTAGATCCTTTGTCCATCATCACATATTGCTTCAGCCTTTGAGGAGGGAAGACTTTGAAAGGGTTCACTCCATTCTTAATGAAAATCTGCCTGTTAGACAGCAACAACCGTCCCCTCCCGCTTGA 552 0.4493 MSSDSANDLAKWKLEEVISIIIVCVIFLTLSDCFGMFKRLMCRVFCGRNQVERRLLDESLPDDPSLQLQSRGLEFSVVQSLPTSQFKKNEGEQDKAINNVECAICLGEFEEGEWLKHLPHCTHSFHVSCIDTWFQSHSNCPLCRSFVHHHILLQPLRREDFERVHSILNENLPVRQQQPSPPA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01557 183 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Pumo11g01557 183 SMART ring_2 102 143 IPR001841 -
Pumo11g01557 183 FunFam E3 ubiquitin-protein ligase ATL6 63 150 - -
Pumo11g01557 183 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 147 IPR044675 -
Pumo11g01557 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 149 IPR013083 -
Pumo11g01557 183 SUPERFAMILY RING/U-box 92 155 - -
Pumo11g01557 183 Pfam Ring finger domain 101 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01557 Pumo-Chr11 46815513 46816064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01557 20 147 C3H Transcription Factor Family AT1G76410 37.500 9.68e-23 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01557 - - gmx:121172630 287.345