Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01556 ATGGCTCCGGCTAAAGTTGATAAGAAGAGTGATCCAAAGGCACAGGCCTTGAAGACTGCTAAGGCAGTTAAGTCTGGTGCTACCTTTAAGAAGAAGGCAAAGAAGATCCGAACCTCTGTCACTTTCCACAGGCCGAAGACATTGAAGAAGGATAGGAACCCGAAGTACCCCCGCATTAGTGCTCCGCCAAGGAACAAGCTTGATCATTATCAGATCCTGAAATACCCTCTCACCACTGAGTCTGCTATGAAGAAGATTGAGGACAACAACACCTTGGTTTTCATTGTCGACCTGCGTGCTGACAAGAAGAAGATTAAGGATGCGGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTCAGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAA 459 0.4619 MAPAKVDKKSDPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01556 152 PANTHER 60S RIBOSOMAL PROTEIN L23A 5 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pumo11g01556 152 Pfam Ribosomal protein L23 72 134 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pumo11g01556 152 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 69 145 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pumo11g01556 152 MobiDBLite consensus disorder prediction 1 15 - -
Pumo11g01556 152 MobiDBLite consensus disorder prediction 1 22 - -
Pumo11g01556 152 FunFam 60S ribosomal protein L23a 31 152 - -
Pumo11g01556 152 ProSitePatterns Ribosomal protein L23 signature. 130 145 IPR001014 GO:0019843
Pumo11g01556 152 Hamap 50S ribosomal protein L23 [rplW]. 72 152 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pumo11g01556 152 Gene3D - 33 152 IPR012677 -
Pumo11g01556 152 Pfam Ribosomal protein L23, N-terminal domain 13 62 IPR005633 -
Pumo11g01556 152 NCBIfam 50S ribosomal protein L23 76 152 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01556 Pumo-Chr11 46811366 46812927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01556 1 152 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.312 5.42e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01556 K02893 - gmx:100779362 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03950 4 80106289 80107854 Pumo11g01556 11 46811366 46812927 PCT