Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01524 ATGAACAATAATGTTGGGAAAGGGAAAAAAGGTTTGGCAGAACAAAATCATATGTTTTTTGACAAAAAGAGTCTCAATAATGGAGTAGTTAATGGAGGGGTAGGCTCTGGATCATCAACTGAAGATGACACAAGATTTAATAAGGTGACTGAAGATGGAAACAATGGGTTGAGGAGTCTGATTCAAATCCATGGGAGCTTGCAGGTTTCACAACAACCACCTCAAGGGCCAGTCATATGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCAACGCGCCATGTTGTGCGTGCTCTGTTACGGAATTGTAGTTACGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAGTCCTGGAAGATCCAGAAAATCGCATTGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAGTGTTTGTCAAAAGGCGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGCGACCCACACCAGAAAATCTGCAAAGTCGAGAAGTAATGATGCATATGAAAACAATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGCGTTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCACGTGTGCCCAAGTGATGCAAACAAAGACTGAAAAAGTTAGTAGTAGATGGGTGCATGCGACAGAAAAAGAGTGCCATGAACTTATTGATCATCTTGATGATGTTGCAATGGGTAAGGACTTGGCTATGGGAATATCTTTGAATATGCAACTAGAGCATCCACTTGAGGAACTGTCTAGCAATCCAATGGTGGGTAAAGGGGCAAATAAGATGTCTGATACAGATGATATGCAGATCGTTAAAGGACAGAGTAATGTCTGTGAAAAAGGACAACTGGAATACAATGGTGATAAAACCGGGACACAGGAAAATCAGGCTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTTTCACAAACAAAAGAAAACTGTTGCTCCAAAGAGCATCCATCCCTTGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATGCTAAAAATGTCACAGGTGAAGAATGCAATGTCTTGAGACATTCAGATCAGTCAGCATTCTCAAAGCTCAAACTGGAAATGTAG 1455 0.4137 MNNNVGKGKKGLAEQNHMFFDKKSLNNGVVNGGVGSGSSTEDDTRFNKVTEDGNNGLRSLIQIHGSLQVSQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKVLEDPENRIDLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATHTRKSAKSRSNDAYENNSDSSDENDYGSRGLSVRDGSDNGSGTQSSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATEKECHELIDHLDDVAMGKDLAMGISLNMQLEHPLEELSSNPMVGKGANKMSDTDDMQIVKGQSNVCEKGQLEYNGDKTGTQENQAMNVIDVTDSNSPQAESRDLNTPNGFSGFSQTKENCCSKEHPSLELTLKRLGEVRDAKNVTGEECNVLRHSDQSAFSKLKLEM 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01524 484 SMART REC_2 90 205 IPR001789 GO:0000160
Pumo11g01524 484 CDD psREC_PRR 92 195 - -
Pumo11g01524 484 PANTHER TWO-COMPONENT RESPONSE REGULATOR 91 374 IPR045279 GO:0009736
Pumo11g01524 484 ProSiteProfiles Response regulatory domain profile. 91 209 IPR001789 GO:0000160
Pumo11g01524 484 MobiDBLite consensus disorder prediction 235 251 - -
Pumo11g01524 484 SUPERFAMILY CheY-like 88 214 IPR011006 -
Pumo11g01524 484 Gene3D - 89 260 - -
Pumo11g01524 484 MobiDBLite consensus disorder prediction 213 270 - -
Pumo11g01524 484 FunFam Two-component response regulator-like PRR37 90 248 - -
Pumo11g01524 484 Pfam Response regulator receiver domain 92 203 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01524 Pumo-Chr11 46259736 46269596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01524 37 480 Response Regulator Gene Family AT5G60100 46.476 6.20e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo11g01524 Response_reg 9.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01524 K12129 - gmx:100803462 896.345