Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01520 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGTTTAATAACGGCGACTCGCCGTTGCCGTTAGAGAAGTTTCCAGAAGGTTCGAGGAACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCCAGTAACGGCGGCGGCGGCGACGAGGACTCGTGCTCCACCCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCGTAACGAAGGAGCTCTTCCCGGTAAGTGGAGGAGTGGCTACGTCGTCGTTTTCAGCGAGGAATGGTTTCGTGGATCTCTCGTTCGATCGCGAGGGAGGGAACAGTGAGATGAAGATGCTTCAGCCTCAGACTCAGACTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGGGTTACGTTTTACAGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCACGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGACGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTAACACTCCACAAATGTGGCCGGTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACTTATGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGGTGGCAGTCAGAATCTTGATCTCAATTTGGGCATAGCGACCCCAGGACCTGGTCCCAAAGAAAATTGGGGACAACTTCAGTTCCCCTCCATTCCTTACAACACGCATGGTGGAAGAAGTTCAATGCAGATGGAAACCAATGTTAATTCTGGAATTGGTAATCCATATTTGAAAAGGATGGTTGTAACTGAAGATCGTCCTTCTGTATGGAATGGCATGTGTCCTAATTTCTTTCCCAATGAGGAAAGAGCGGAGAGAATCGGCATTGATCCTTCAAAAGGACTCCCCAGTTGGGCGTGGCAAACACATGGCCAGGTCAATGCTATCCCAGTACCAACGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTGCTATCTTTCCAACAAGATCTATGAACTCAATTCCCCAGAATCTTTGTTTTACTTCATCCAGCACGCCTACCAGCAATGCATCTGAATACTTTTACCAGGTTAAGCCCCCGCAGGCACCACCCTAG 1419 0.4841 MLDLNLNAEWTDSFNNGDSPLPLEKFPEGSRNQMAESGTSNSSVVNADGSSNGGGGDEDSCSTRADDVYTFNFDILKVEGANDVVTKELFPVSGGVATSSFSARNGFVDLSFDREGGNSEMKMLQPQTQTQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEGGSQNLDLNLGIATPGPGPKENWGQLQFPSIPYNTHGGRSSMQMETNVNSGIGNPYLKRMVVTEDRPSVWNGMCPNFFPNEERAERIGIDPSKGLPSWAWQTHGQVNAIPVPTFSAAASSGFSISATFPSTAIFPTRSMNSIPQNLCFTSSSTPTSNASEYFYQVKPPQAPP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01520 472 CDD AP2 242 287 IPR001471 GO:0003700|GO:0006355
Pumo11g01520 472 MobiDBLite consensus disorder prediction 123 140 - -
Pumo11g01520 472 FunFam AP2-like ethylene-responsive transcription factor 150 209 - -
Pumo11g01520 472 MobiDBLite consensus disorder prediction 13 61 - -
Pumo11g01520 472 MobiDBLite consensus disorder prediction 123 152 - -
Pumo11g01520 472 SUPERFAMILY DNA-binding domain 242 286 IPR016177 GO:0003677
Pumo11g01520 472 SUPERFAMILY DNA-binding domain 150 208 IPR016177 GO:0003677
Pumo11g01520 472 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Pumo11g01520 472 ProSiteProfiles AP2/ERF domain profile. 151 207 IPR001471 GO:0003700|GO:0006355
Pumo11g01520 472 SMART rav1_2 151 213 IPR001471 GO:0003700|GO:0006355
Pumo11g01520 472 SMART rav1_2 243 291 IPR001471 GO:0003700|GO:0006355
Pumo11g01520 472 MobiDBLite consensus disorder prediction 453 472 - -
Pumo11g01520 472 MobiDBLite consensus disorder prediction 32 58 - -
Pumo11g01520 472 CDD AP2 151 209 IPR001471 GO:0003700|GO:0006355
Pumo11g01520 472 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 120 316 - -
Pumo11g01520 472 Gene3D AP2/ERF domain 150 208 IPR036955 GO:0003700|GO:0006355
Pumo11g01520 472 Gene3D AP2/ERF domain 242 286 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01520 Pumo-Chr11 46174833 46178325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01520 1 433 AP2-EREBP Transcription Factor Family AT5G60120 46.681 6.80e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo11g01520 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01520 K09284 - gmx:100788303 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03916 4 79695860 79700253 Pumo11g01520 11 46174833 46178325 PCT