Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01512 ATGGATCCTTCCAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCTCAGCAAGAGAGGAAACCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCTACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTATTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCTTCAACATCAAAGAGAGTTCAAGATCAAGCATTCACACCCAATCCCAACAACCCTCTCACTGGCCTCCCTTCATTGTCCTATGACTCCAGTGACCTCACCCTTGCATTGGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGCTATGATGAGCATGATCTTGCAATGTTGGGTAACCCCACAAGCACCCCATGTGATATCCTTGGCAACACTGGCATGCACCACTCATCCACAAACCCAGGCTTCTTGGATGCCCTCAGAAGTGGGTTCCTTGGAACCCAAAATAATATGCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGACATGATGCTGCCTTATGATCAAGAAATGAGTCTTGCCACCACCCAGGCAGTGACAGTCACCACCATGAAACAAGAACTTTGCAATGGAAGGGAACAAAGTGAGAGTAAGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGTCTCAATTCATCATGGCATGGACTTCTCAACAGTCCCTTAATGTAG 903 0.4795 MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRVQDQAFTPNPNNPLTGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDLAMLGNPTSTPCDILGNTGMHHSSTNPGFLDALRSGFLGTQNNMQNLYYGYGNGDMGEVDNGNACGGVGVSGDMMLPYDQEMSLATTQAVTVTTMKQELCNGREQSESKVLWGFPWQLNGDTNMGELDSGRASWNGLNSSWHGLLNSPLM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01512 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 188 IPR045174 GO:0003700|GO:0006355
Pumo11g01512 300 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Pumo11g01512 300 MobiDBLite consensus disorder prediction 1 22 - -
Pumo11g01512 300 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pumo11g01512 300 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pumo11g01512 300 MobiDBLite consensus disorder prediction 90 121 - -
Pumo11g01512 300 MobiDBLite consensus disorder prediction 83 121 - -
Pumo11g01512 300 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01512 Pumo-Chr11 46021370 46024208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01512 1 300 C2C2-Dof Transcription Factor Family AT2G28510 39.820 5.33e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo11g01512 zf-Dof 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01512 - - gmx:100799737 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03908 4 79562532 79564544 Pumo11g01512 11 46021370 46024208 PCT