Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01507 ATGGAGAGCAGTGACACATACACCCCCTCTTCCTCTGCCCCACTTTCTCACTCACCAACTTCCTCTTCTTCCTCACCACCACCACCTCCACTTCCCACTGTTGTTATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCACACCGTGTATTCGGTGCCAGCAACATCATCAAGTTCCTTCAGGAACTTCCGGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAACTTCAAGCACAATTGGCCAAGGCACAAGTTGAGGTTGTGAACATGCAACTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTGGATAATTTCATTTCAACTCCTCCCCACAGTGCTGGCTATCAAAGTGGCATGAACTTCTTTGAGGAGAACACTAGCCTAAACTCACTATGGGAACAGCCCCTTTGGACATGA 615 0.4813 MESSDTYTPSSSAPLSHSPTSSSSSPPPPPLPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQVEVVNMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHSAGYQSGMNFFEENTSLNSLWEQPLWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01507 204 MobiDBLite consensus disorder prediction 1 20 - -
Pumo11g01507 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Pumo11g01507 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 166 - -
Pumo11g01507 204 MobiDBLite consensus disorder prediction 1 30 - -
Pumo11g01507 204 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Pumo11g01507 204 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01507 Pumo-Chr11 45961325 45963536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01507 34 204 AS2 family AT1G07900 67.630 9.88e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo11g01507 LOB 2.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01507 - - gmx:100789504 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01507 11 45961325 45963536 Pumo11g01507 11 45961325 45963536 ECH
Pumo4g03902 4 79486855 79489075 Pumo11g01507 11 45961325 45963536 PCT