Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01505 ATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAGGTGCCCTCATGAGGGGTGCAAGTATGAGCTTCTAGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTCTTAGAGTACTCGGGAAATCTTATCGGTGAATCTGAACAATCAGGACCCAAGAAATGCCTAAAATGTCATGGCCTTTTCTGCTTTAACTGCAAGGTCCCTTGGCATAGCGGTATGACTTGTTATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGCTTATGGCGGCAGTGTGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTGCTTGCCCACTTTGGGCCGAGGACAATATATGGTTAGAGGATCATGAGGGAGAGTTGGAAGAAGAAGAAGAAGAAGATGATGATGATTATAGCTCTGATTATTCTGATGGTTATTTTTACTAA 669 0.417 MKQHVEVKLLHGMVPRCPHEGCKYELLVDSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPRCSALMSKTEVLEYSGNLIGESEQSGPKKCLKCHGLFCFNCKVPWHSGMTCYTYKRMNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLEDHEGELEEEEEEDDDDYSSDYSDGYFY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01505 222 ProSiteProfiles TRIAD supradomain profile. 1 194 IPR044066 -
Pumo11g01505 222 MobiDBLite consensus disorder prediction 197 215 - -
Pumo11g01505 222 SMART ibrneu5 127 182 IPR002867 GO:0008270
Pumo11g01505 222 SMART ibrneu5 41 114 IPR002867 GO:0008270
Pumo11g01505 222 FunFam RBR-type E3 ubiquitin transferase 112 221 - -
Pumo11g01505 222 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 188 IPR031127 GO:0004842|GO:0016567
Pumo11g01505 222 Gene3D - 111 219 - -
Pumo11g01505 222 Pfam IBR domain, a half RING-finger domain 133 182 IPR002867 GO:0008270
Pumo11g01505 222 Pfam IBR domain, a half RING-finger domain 43 114 IPR002867 GO:0008270
Pumo11g01505 222 SUPERFAMILY RING/U-box 128 191 - -
Pumo11g01505 222 SUPERFAMILY RING/U-box 56 119 - -
Pumo11g01505 222 CDD BRcat_RBR_unk 54 114 - -
Pumo11g01505 222 MobiDBLite consensus disorder prediction 197 222 - -
Pumo11g01505 222 CDD Rcat_RBR_unk 140 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01505 Pumo-Chr11 45934224 45936326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01505 8 173 C3H Transcription Factor Family AT2G19610 34.731 4.59e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01505 - - gmx:100786163 410.609