Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01498 ATGGATTTGGTACCCAGCGTCAAGGAAAAATTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCCGTTCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCATCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATTCCTTTCAACCAGATATGAAGATTGGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTACAGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTCTGTCGTCTCACTCGTGCAGACCCATTTTGGGCTTCAGTGGGGCACCCTTTGCGTCCTGTGAAGTTGACCACAACCAGTAATCCAACTGATGGATCCAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTTAATAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGATGGTCCAATTATTACGCCATATACAAAAGACGGAATTAACAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCACCATGCTGCAGATCCTAAACTCAATTCCAAAGGAGTCTGATGGTGAGAAATTTGAAGACGCTCTTGCGCGTGTCTGCCGTTGTGTTGGGGGCGGAAATGCAGCTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTATCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCCTGTATTCACATGGGTTGCTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGTTCAAGGAAGTGGCAATGTCCTATATGTCTGAAAAACTATGCTTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAATTGTAGTGAAGAAATTACTGAGATTGAGGTGAGGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCTGGAATTAGGGAATCTATCACAGTGGCACCTTCCTGATGGAACCCTGTGTGTTTCAACTGATGGAGATGTCAACAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTGTTTCAGACAGTCCTACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGATAATAAATTGAAAGGGGTTTTTGGAAATCCTGAACATGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAATCAGGGAGGTGGTGGGCATATTGACTATTCCACTACAAATGGGATTGAGATGGATTCTTTGTCTCTCAATAATGTTGATTTAGCATATGAATATACTACACACAACACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTTTTGGTATCTCCTGCAATTGCGTATAAGAACAACCGAAATGATGCTGCAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATACTGAAGATCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCTAATGATGATGATTTTGGGATGTCTTCCCTGTGGTCATTGCCTTCTGGAAGTCAGGCTGGTCCTGGATTCCAATTATTTGGTTCTGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAGCATGGTCCTATGAATTGCTCCTCGTCACTAAATGGTTATGCATTGGCTCCTGATGCTGCTTTGGGATCTGGTGGTATCTTGCAAGATTCCTCTGCTGGTCGGTCGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTGGCATTCGGTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCAGAATGAATTGAGAGATCAGGCAAATGTGGCTAATGGTGCCTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGTTGGTGGTAACAATGGTGATGCTTCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCACCCAGAGAAGGTGCCACGGATACTTTGGATGATACTGTACATTCCTAA 2511 0.4317 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKSEFDDSFQPDMKIGCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLTRADPFWASVGHPLRPVKLTTTSNPTDGSNPVQSVERTFQLNRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVKRRTMLQILNSIPKESDGEKFEDALARVCRCVGGGNAADDADSDSDLEVVSDTFTINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCSEEITEIEVRPDGSWRVKVKSESERLELGNLSQWHLPDGTLCVSTDGDVNRVDTLKQVKQEGVSDSPTGLKLGIRKNRNGVWEVSKPEGTNTSSDNKLKGVFGNPEHVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSLSLNNVDLAYEYTTHNTSAQVGGAEVIVLSDSEEDNDLLVSPAIAYKNNRNDAADGYSVPPPVIVDSYTEDHNLGGNSCLGLFPNDDDFGMSSLWSLPSGSQAGPGFQLFGSDADVSDALVHLQHGPMNCSSSLNGYALAPDAALGSGGILQDSSAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVANGACTEEDWISLSLGGGVGGNNGDASTQNGLNSRHQIPPREGATDTLDDTVHS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01498 836 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Pumo11g01498 836 MobiDBLite consensus disorder prediction 803 818 - -
Pumo11g01498 836 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Pumo11g01498 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Pumo11g01498 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Pumo11g01498 836 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Pumo11g01498 836 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Pumo11g01498 836 Gene3D SAP domain 3 58 IPR036361 -
Pumo11g01498 836 MobiDBLite consensus disorder prediction 542 565 - -
Pumo11g01498 836 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Pumo11g01498 836 CDD SP-RING_Siz-like 360 409 IPR031141 -
Pumo11g01498 836 SUPERFAMILY SAP domain 1 59 IPR036361 -
Pumo11g01498 836 Pfam PHD-finger 115 166 IPR019787 -
Pumo11g01498 836 Pfam SAP domain 12 42 IPR003034 -
Pumo11g01498 836 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Pumo11g01498 836 FunFam E3 SUMO-protein ligase SIZ2 333 447 - -
Pumo11g01498 836 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Pumo11g01498 836 SMART sap_9 11 45 IPR003034 -
Pumo11g01498 836 MobiDBLite consensus disorder prediction 803 836 - -
Pumo11g01498 836 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 661 - -
Pumo11g01498 836 SMART PHD_3 114 166 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01498 Pumo-Chr11 45827269 45836313 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo11g01498 PHD 3.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01498 - - gmx:100793735 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03898 4 79410856 79420257 Pumo11g01498 11 45827269 45836313 PCT