Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01495 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGGTGAGAAAGGTGCTGCTGGTGTTACTTGTTGGTCCTCTTCCACTTGTTCATCCTCTACTTCCTCTTCAGCTCGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCATCTTTCTCTCCTTTCACACCAATGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTTCCTCAGGCTGAGTTGGAAGGGATGCATTCAGAAGGCAAGGAACTTGAGGAATTGGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCATCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTAATCCAAGGCGGCATCTACTCACCACTGGCTGGAGCATTTTTGTAAGCCAAAAGAATCTTGTCTCTGGTGATGCAGTGCTCTTCCTAAGGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGATCTTCCTGAATCAGTTATCGGTAGCCAGAACTGCTACCCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATCAAGAATCCAGTGAGCATTGGGACAAGATTCAAAATGAGATTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAGTAGTGGCACGTTGATTGGAACTAGTGATTTGGATCCTTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCTTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGTGGGTTGATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGACACAGTAACCAAGCCTCCAGGTTTTGAGATGAGCTCTCCTAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTACCTCTTCTGAGCTGAGTAGTGTCCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAGTGCCCAATCTAAGTTGCACAACTTTCAACCTCCACCAGGCAACCAAACCCCACTTTCAACCAGCATTGTTTCCTTATGGGGATATTCACCAAGCTGGTCAAGCTAGCTTGTTTTGCTCAAAATCCACCACATTTCAGAGAGAGAATGTCCCATTTAACAAGCCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGACGATCAGATCTCCCAAATGAGCATAAGCTGCAGGACAATAATATTTCTGCTGCTGCTTCATTAGGGGCTTCAAATATGGGGGTTTCTAATGACAACAATGTCCAGGGAAAGGTAAATGCCTGCAAACTATTCGGGTTTTCCTTGTCTGGGGAAACTACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCGGCTACAATGATCTGCTGAGTGAACTAGAGAGACTGTTTGGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGAGATGACCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAAAAGATGACAATTGGGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCTCCAATGATTATGGAAGCTTCAAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACGGCAGTTAGAGTCTAA 2397 0.4493 MEIDLNHEVTEVEKNAFCDRECGEKGAAGVTCWSSSTCSSSTSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMHSEGKELEELGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGNPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAISTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCSSGTLIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGSGLMGFEESVRSPKVLQGQENAGFVSLYYGCDTVTKPPGFEMSSPSHPNLGSAEVRKVTSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDLNLGAWGVPNLSCTTFNLHQATKPHFQPALFPYGDIHQAGQASLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGRSDLPNEHKLQDNNISAAASLGASNMGVSNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPMIMEASKSSSVGQPDYSPTAVRV 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01495 798 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Pumo11g01495 798 SUPERFAMILY DNA-binding pseudobarrel domain 158 277 IPR015300 -
Pumo11g01495 798 SMART B3_2 166 268 IPR003340 GO:0003677
Pumo11g01495 798 SUPERFAMILY CAD & PB1 domains 673 749 - -
Pumo11g01495 798 Gene3D - 164 268 IPR015300 -
Pumo11g01495 798 FunFam Auxin response factor 665 759 - -
Pumo11g01495 798 FunFam Auxin response factor 164 268 - -
Pumo11g01495 798 ProSiteProfiles PB1 domain profile. 670 754 IPR000270 GO:0005515
Pumo11g01495 798 CDD B3_DNA 164 266 IPR003340 GO:0003677
Pumo11g01495 798 Gene3D - 329 400 - -
Pumo11g01495 798 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 759 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo11g01495 798 FunFam Auxin response factor 329 402 - -
Pumo11g01495 798 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo11g01495 798 Gene3D - 666 759 - -
Pumo11g01495 798 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01495 Pumo-Chr11 45806511 45812574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01495 48 798 B3 DNA Binding Superfamily AT5G60450 60.944 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo11g01495 B3 6.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01495 - - gmx:100783513 1493.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03896 4 79396981 79402073 Pumo11g01495 11 45806511 45812574 PCT