Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01490 ATGATGTCTGAAGAAACCTTTTCTGTTCCTCCCAACAACACCATCAGAGCCTCCTCCTTGGTTCATGCTCATGTTCAACCCCCATGCTCAAACCCTAATCCTAACCCTAATTCAAATCCAGCTAAGAAAAGGAGAAGTCTACCCGGAACTCCAGATCCAGATGCAGAAGTGGTGGCTCTTTCACCAAAGTCCCTGATGGCCACCAACCGTTTCATATGTGAAATCTGCAAAAAGGGTTTTCAGAGGGACCAGAATTTGCAGCTGCATAGACGTGGCCACAACCTTCCATGGAAGCTGAAGCAGAGAACAAACAAAGATCCAGTGAGGAGGAAGGTGTACGTGTGCCCTGAGAAGAGTTGCGTGCACCATGACCCCTCTAGAGCCTTGGGGGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGCAAGGATAACAACAGTTCCAGCAGCTTTAAGCAACCTGAGAACCGATCATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCATATTTTTTCCGGGTTTCACTCAGATCAATTCAGTGGAACTTCAGAAGCATTGGCGATTAATTATGCTGACGCAAACCATCATCATCAACAGAAGCTAAGGCTACCACTATGGCTAGACCAGCAGGGAAATAATTCTCAAGTACTTGATCATCACCACACTCTTAACAACTTCCCAACCAAATTACCAAGTGCTTTCACTACTTCAGGACCAAACTCTGTGGCTGATCTAGTGCAAACTATGGACATGTTTGTAGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCATCATTTGGAGGTGCCAATGCCAACCTTTCTGTGCTACCGCCACATGGACTGAAGCAAGAGCAAGAAGAAAACAAAGGAGACTTGTCGCATAGTGGAAGCTCCAATAACTTGTACTTGAGTAGTAGTAATCAGAACCCACCTCATCATCACTACATGTCAGCCACCACACTGTTGCACAAAGCTGTTCAAATGGGATCTACGAGGGTCATCAACGACAACGCGTTTGGCTCCATCATGGCCACCACCAACAACAGAAACAACAATGTTGTTGTTGAGGTTCAGAAGCTGAACGAGTTGGTGACTGTGGAAGGGTGCACCAACACCAACCTTGGAGGTGGGTATTTATTAAATGACTCAAACAATAACTCGTTTGTGGCTGTGAATGGTGGCACCACCAAGGGTGGTGGTGGTGGTGGTTTGGAGCACATGGTGATGCCGGTGGATGAGGAGACAACACAAGCAGCATCAATTATGGGGAAGCAATTACACTCACTAAGCTCACACAACAAAAGTCAACTTGGTTTAACCAGAGACTTCTTGGGTGTTGGAGATCATAGTAATAATAATAACATTGACTCTATAAGAAGACCCTTGATCTTTCAGCAAGACCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCTCAGCCTCAGCCATGAACCTTCAGAGCCAGTACGGTGGACACTACTGCTAG 1683 0.4611 MMSEETFSVPPNNTIRASSLVHAHVQPPCSNPNPNPNSNPAKKRRSLPGTPDPDAEVVALSPKSLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRTNKDPVRRKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPAALSNLRTDHHHLTNAQASRIPHIFSGFHSDQFSGTSEALAINYADANHHHQQKLRLPLWLDQQGNNSQVLDHHHTLNNFPTKLPSAFTTSGPNSVADLVQTMDMFVGPQFVNYRYPEASFGGANANLSVLPPHGLKQEQEENKGDLSHSGSSNNLYLSSSNQNPPHHHYMSATTLLHKAVQMGSTRVINDNAFGSIMATTNNRNNNVVVEVQKLNELVTVEGCTNTNLGGGYLLNDSNNNSFVAVNGGTTKGGGGGGLEHMVMPVDEETTQAASIMGKQLHSLSSHNKSQLGLTRDFLGVGDHSNNNNIDSIRRPLIFQQDLVEFNAMGSASASASAMNLQSQYGGHYC 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01490 560 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Pumo11g01490 560 SMART c2h2final6 113 143 IPR013087 -
Pumo11g01490 560 SMART c2h2final6 71 93 IPR013087 -
Pumo11g01490 560 SMART c2h2final6 148 168 IPR013087 -
Pumo11g01490 560 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Pumo11g01490 560 Gene3D Classic Zinc Finger 105 196 - -
Pumo11g01490 560 FunFam protein indeterminate-domain 12-like 50 119 - -
Pumo11g01490 560 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 522 IPR031140 -
Pumo11g01490 560 MobiDBLite consensus disorder prediction 1 55 - -
Pumo11g01490 560 MobiDBLite consensus disorder prediction 357 379 - -
Pumo11g01490 560 MobiDBLite consensus disorder prediction 1 28 - -
Pumo11g01490 560 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pumo11g01490 560 MobiDBLite consensus disorder prediction 348 379 - -
Pumo11g01490 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01490 Pumo-Chr11 45710860 45714339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01490 41 216 IDZ Gene Family AT3G45260 84.091 3.68e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g01490 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01490 K25870 - gmx:100817691 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03891 4 79304413 79307212 Pumo11g01490 11 45710860 45714339 PCT