Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01475 ATGCTCAATAAGACTCTTTCTTTTGCGATGGGGTGCTGTAGTTGCTTTGGGTTCATCAGGACACCTAACCGTCAAAGTCAAAGGTCTAAGCCTGCCACTAACAATAATCTCTGCCAGGAGCCTCTGTTGGATGATGATATTGAAGACGAAGAGGGTGAGCCTTTGTATAATGAAGAGGTTACTAACACTAGTGGAGATGAAGGCGAGGAGGAAACTCGTCCCAAGCGATCGGAAGAAATTTTGAACTTGAGAGTAGAGAATGGCATGATTTGTAGGCAGTTTCCCGTTAAGGAGACTCACAAACTTGTTCGCACCGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTACGGGAAAGTGGCTCTTTATCGAAGCTCTGTCGATGGAAAGCATTATGCAATTAAGGCCTTTCATAAATCTCATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGACGGATGTACTACGTGAGGTTTTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCGTTGAGGTGATTAATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATATGTGGAAGGTAAATGGGTTTGTGAGGGTTCAGGTCCCACTTGCAGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCATAATATAGTTCATGGGGATATTAAGCCAGATAATCTGTTGATTACTCGTCGTGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTGTGACCTATGGCGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACACTTCAAGATACATATGACAAAATAGTCAATAATCCTTTAGTACTCCCCAACGATATGAATCCGCCATTGAAGAACTTAATAGAAGGACTACTTTCCAAAGACCCAAAATTAAGGATGACTTTGGGTGATGTTGCTGAAGATAGCTGGGTTATTGGAGATGATGGGCCAATTCCTGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGGAATTGAGGACAATGATGAGAGCAATACTGACTAA 1227 0.4214 MLNKTLSFAMGCCSCFGFIRTPNRQSQRSKPATNNNLCQEPLLDDDIEDEEGEPLYNEEVTNTSGDEGEEETRPKRSEEILNLRVENGMICRQFPVKETHKLVRTEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVFIMKMLEHPNIVNLVEVINDPESDNFYMVLEYVEGKWVCEGSGPTCSLGEETARRYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRRGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECILGVTYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNDMNPPLKNLIEGLLSKDPKLRMTLGDVAEDSWVIGDDGPIPEYLCWCKRKSLGIEDNDESNTD 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01475 408 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01475 408 Gene3D Phosphorylase Kinase; domain 1 111 213 - -
Pumo11g01475 408 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 63 380 - -
Pumo11g01475 408 FunFam Serine/threonine-protein kinase Ssp1 111 213 - -
Pumo11g01475 408 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Pumo11g01475 408 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g01475 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Pumo11g01475 408 SUPERFAMILY Protein kinase-like (PK-like) 108 389 IPR011009 -
Pumo11g01475 408 Gene3D Transferase(Phosphotransferase) domain 1 215 384 - -
Pumo11g01475 408 MobiDBLite consensus disorder prediction 56 76 - -
Pumo11g01475 408 FunFam Serine/threonine-protein kinase GRIK2 107 408 - -
Pumo11g01475 408 CDD STKc_LKB1_CaMKK 123 378 - -
Pumo11g01475 408 Pfam Protein kinase domain 119 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01475 Pumo-Chr11 45234411 45239852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01475 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 1.69e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Pumo11g01475 Pkinase 7.8e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01475 K00908 - gmx:100789178 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01475 11 45234411 45239852 Pumo11g01475 11 45234411 45239852 ECH