Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo11g01470 | ATGAGTACAGAGGAAAAGCCTGTGAGTGAGGAACATGATTCAGGTCCTTGCAGAAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGTGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCTAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACATATAATTCTCCTGGACCTTCAACATCAAGAAGCAAATCATCCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGGACACCAGCAGATATTGAAAAGCCAAATACTGCAGCTCCAGAAGTTTCCTCTTCAGGCGTTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCGTCATTACCACTAGATGAAATTAGACAATCAAACACTGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAACAAAAGAGAAGCCCAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACGACAAAGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGGCCACGCCCACAACAAATGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTAACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGCGCAAATAGGTCTCAGCTGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTGGCCACATTTGCTGGCTTTGGCGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGGAGAAGAGTGCAGGCTCTTTCAGAGCAGCGACATGGCTCTCAACTGATGCCACAAGTAGCACAAAATCCTCAAACTTCAAACACGCCACGTCCAGGTTCAGGTTCAGGTTCAGGTTCAGGTCCTTCCAACCACAGTCAACCTGTGGTGCAAAATCAACAGAACTCAAATCAGAGCTGA | 1563 | 0.4383 | MSTEEKPVSEEHDSGPCRRTVSLPVQKVDDPMGITEETTHVPPRKRQNLLLEIPSRTEECSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTYNSPGPSTSRSKSSIRSLLPKLSFRYRTPADIEKPNTAAPEVSSSGVGEKPSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNTESSHGGSVGGPLNKREAQRKIARSLSVPANDKDKSIRRMDSFFRVVPSTPRVKEGNELLATPTTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRVQALSEQRHGSQLMPQVAQNPQTSNTPRPGSGSGSGSGPSNHSQPVVQNQQNSNQS | 520 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 62 | 150 | - | - | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Pumo11g01470 | 520 | Pfam | RING-variant domain | 264 | 311 | IPR011016 | GO:0008270 | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
Pumo11g01470 | 520 | SMART | ringv_2 | 263 | 312 | IPR011016 | GO:0008270 | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 196 | 210 | - | - | |
Pumo11g01470 | 520 | PANTHER | OS02G0165000 PROTEIN | 30 | 479 | - | - | |
Pumo11g01470 | 520 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 319 | IPR013083 | - | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 79 | 115 | - | - | |
Pumo11g01470 | 520 | CDD | RING_CH-C4HC3_MARCH | 264 | 312 | - | - | |
Pumo11g01470 | 520 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 256 | 318 | IPR011016 | GO:0008270 | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 471 | 520 | - | - | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 171 | 187 | - | - | |
Pumo11g01470 | 520 | MobiDBLite | consensus disorder prediction | 170 | 210 | - | - | |
Pumo11g01470 | 520 | SUPERFAMILY | RING/U-box | 260 | 315 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo11g01470 | Pumo-Chr11 | 45167673 | 45173971 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo11g01470 | 261 | 318 | C3H Transcription Factor Family | AT2G37950 | 49.153 | 3.73e-13 | 67.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo11g01470 | - | - | gmx:100815566 | 890.567 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g03882 | 4 | 79160654 | 79164521 | Pumo11g01470 | 11 | 45167673 | 45173971 | PCT |