Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01470 ATGAGTACAGAGGAAAAGCCTGTGAGTGAGGAACATGATTCAGGTCCTTGCAGAAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGTGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCTAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACATATAATTCTCCTGGACCTTCAACATCAAGAAGCAAATCATCCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGGACACCAGCAGATATTGAAAAGCCAAATACTGCAGCTCCAGAAGTTTCCTCTTCAGGCGTTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCGTCATTACCACTAGATGAAATTAGACAATCAAACACTGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAACAAAAGAGAAGCCCAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACGACAAAGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGGCCACGCCCACAACAAATGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTAACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGCGCAAATAGGTCTCAGCTGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTGGCCACATTTGCTGGCTTTGGCGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGGAGAAGAGTGCAGGCTCTTTCAGAGCAGCGACATGGCTCTCAACTGATGCCACAAGTAGCACAAAATCCTCAAACTTCAAACACGCCACGTCCAGGTTCAGGTTCAGGTTCAGGTTCAGGTCCTTCCAACCACAGTCAACCTGTGGTGCAAAATCAACAGAACTCAAATCAGAGCTGA 1563 0.4383 MSTEEKPVSEEHDSGPCRRTVSLPVQKVDDPMGITEETTHVPPRKRQNLLLEIPSRTEECSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTYNSPGPSTSRSKSSIRSLLPKLSFRYRTPADIEKPNTAAPEVSSSGVGEKPSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNTESSHGGSVGGPLNKREAQRKIARSLSVPANDKDKSIRRMDSFFRVVPSTPRVKEGNELLATPTTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRVQALSEQRHGSQLMPQVAQNPQTSNTPRPGSGSGSGSGPSNHSQPVVQNQQNSNQS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01470 520 MobiDBLite consensus disorder prediction 62 150 - -
Pumo11g01470 520 MobiDBLite consensus disorder prediction 1 47 - -
Pumo11g01470 520 MobiDBLite consensus disorder prediction 1 17 - -
Pumo11g01470 520 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Pumo11g01470 520 MobiDBLite consensus disorder prediction 135 150 - -
Pumo11g01470 520 SMART ringv_2 263 312 IPR011016 GO:0008270
Pumo11g01470 520 MobiDBLite consensus disorder prediction 196 210 - -
Pumo11g01470 520 PANTHER OS02G0165000 PROTEIN 30 479 - -
Pumo11g01470 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 319 IPR013083 -
Pumo11g01470 520 MobiDBLite consensus disorder prediction 79 115 - -
Pumo11g01470 520 CDD RING_CH-C4HC3_MARCH 264 312 - -
Pumo11g01470 520 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
Pumo11g01470 520 MobiDBLite consensus disorder prediction 471 520 - -
Pumo11g01470 520 MobiDBLite consensus disorder prediction 171 187 - -
Pumo11g01470 520 MobiDBLite consensus disorder prediction 170 210 - -
Pumo11g01470 520 SUPERFAMILY RING/U-box 260 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01470 Pumo-Chr11 45167673 45173971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01470 261 318 C3H Transcription Factor Family AT2G37950 49.153 3.73e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01470 - - gmx:100815566 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03882 4 79160654 79164521 Pumo11g01470 11 45167673 45173971 PCT