Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01462 ATGCTGCCGAAGTTCGACCCCTCCCAGGTCATTGACGTCTTCGTCCGCGTCATCGGCGGCGAGGTCGGTGTGGCGAGTTCCCTCGCCCCGAAGATCGGTCCGCTCAATCTCTCTCCCAAGAAGATCGGAGAAGACATCGCCAAGGAGACCGCGAAGGACTGGAAGGGCCTCAGGGCCAAGGTCTCGGTGGTTCCCTCTGCCGCCGTGCTCGTCATCAAGGCCCTCAAGGAGCCTGAGCGCAATCACAAGAAGACGAAGAACATCAAGCACAACGGCAACATCTCCCTCGACAACGTCATCGAGATTGCTAGGGTTATGAGTCCGAGGTCCATGGCGAAGGACCTCAACGACAACATCAAGGAGATTCTCGGAACTTGCATCTCCGTCGGATGCACCGTTGATGGAAAGGATCCCAAGGACTTGCAGCAAGAGATTACCGATGGTGATGTTGAGGTTGCTAGAAGTTTTAAGTAA 474 0.557 MLPKFDPSQVIDVFVRVIGGEVGVASSLAPKIGPLNLSPKKIGEDIAKETAKDWKGLRAKVSVVPSAAVLVIKALKEPERNHKKTKNIKHNGNISLDNVIEIARVMSPRSMAKDLNDNIKEILGTCISVGCTVDGKDPKDLQQEITDGDVEVARSFK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01462 157 Pfam Ribosomal protein L11, RNA binding domain 64 133 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pumo11g01462 157 ProSitePatterns Ribosomal protein L11 signature. 120 135 IPR020785 GO:0003735|GO:0005840|GO:0006412
Pumo11g01462 157 Gene3D - 1 70 IPR036796 -
Pumo11g01462 157 Gene3D - 71 153 IPR036769 -
Pumo11g01462 157 Pfam Ribosomal protein L11, N-terminal domain 15 63 IPR020784 -
Pumo11g01462 157 CDD Ribosomal_L11 13 133 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pumo11g01462 157 SMART rl11c 13 134 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pumo11g01462 157 SUPERFAMILY Ribosomal protein L11, C-terminal domain 65 138 IPR036769 -
Pumo11g01462 157 FunFam 60S ribosomal protein L12 71 153 - -
Pumo11g01462 157 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 76 IPR036796 -
Pumo11g01462 157 Hamap 50S ribosomal protein L11 [rplK]. 9 135 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pumo11g01462 157 PANTHER 60S RIBOSOMAL PROTEIN L12 1 140 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01462 Pumo-Chr11 45101359 45116681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01462 1 152 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 73.620 2.92e-85 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01462 K02870 - gmx:100789561 264.618