Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01458 ATGGCTATGGCTGTGGCTCAACACAGAGAAAGTAGCAGCAGTGGAAGCATTGAGAAGCATCTAGATTCTGGCAAGTATGTGAGGTACACTGCTGAGCAAGTTGAGGCTCTTGAAAGGGTCTATGCTGAGTGCCCTAAGCCTAGTTCTTTGAGGAGGCAGCAATTGATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGTAGGTGTAGGGAGAAGCAGAGAAAAGAAGCTTCTAGGCTTCAGACTGTGAACCGCAAACTCACTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTATATGAGGCAGCAATTGCATACTACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCTCAGCATACCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATCGCAGAGGAAACCTTGACAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCGCAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGAACCATTGAACTTGTCTACACACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATATACCACTAGTTTGGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACAGGCCCTAATCCAGCTGCTGCTGCTCAGTTTGTAAGGGCTGAAACGCTCCCTAGTGGCTACTTGATCCGACCATGTGAGGGTGGAGGGTCAATCATTCACATAGTAGACCACCTAAATCTTGAGGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAGTCATCCAAGGTGGTTGCTCAGAAAATGACTATTGCGGCGCTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAGGTGGTTTATGGATTGGGTAGGCAGCCTGCTGTTCTGCGGACTTTCAGCCAGAGATTGAGCAGAGGCTTCAACGATGCTGTAAATGGATTCAATGATGATGGGTGGTCTGTATTGAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAATTCAACCAAGAATTTAAGTGGCACTTCTAACCCAGCAAGCTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTTCAAAATGTCCCTCCTGCAGTTTTGGTTCGTTTTCTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAGAATGCTGTTGGGGCTTGTTCCGAGCTCGTATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCATTGGTTCCGTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAGGTGACAAAAAGGATACAGCTGCTGCAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTGGGCCCTGCAACAACTGCTGGTGCAGATGCATCAGTCAAGTCAAAACACACGATCAGTGTTGACTATTGCCTTCCAGTTCCCTTTTGA 1941 0.4693 MAMAVAQHRESSSSGSIEKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHTTSAATTDASCDSVVTTPQHTMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGTGPNPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDTAAANRTLDLTSGFEVGPATTAGADASVKSKHTISVDYCLPVPF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01458 646 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Pumo11g01458 646 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 21 635 IPR044830 GO:0003700
Pumo11g01458 646 CDD START_ArGLABRA2_like 158 374 - -
Pumo11g01458 646 SMART HOX_1 22 88 IPR001356 GO:0003677
Pumo11g01458 646 Pfam START domain 164 371 IPR002913 GO:0008289
Pumo11g01458 646 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Pumo11g01458 646 Gene3D - 198 380 IPR023393 -
Pumo11g01458 646 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Pumo11g01458 646 Gene3D - 18 91 - -
Pumo11g01458 646 SMART START_1 163 373 IPR002913 GO:0008289
Pumo11g01458 646 Coils Coil 94 121 - -
Pumo11g01458 646 CDD homeodomain 25 85 IPR001356 GO:0003677
Pumo11g01458 646 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Pumo11g01458 646 CDD bZIP 77 116 - -
Pumo11g01458 646 SUPERFAMILY Bet v1-like 163 375 - -
Pumo11g01458 646 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01458 Pumo-Chr11 45038263 45043021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01458 1 621 Homeobox Transcription Factor Family AT5G60690 86.356 0.0 1131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo11g01458 START 1.4e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01458 K09338 - gmx:100804870 1234.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01458 11 45038263 45043021 Pumo11g01458 11 45038263 45043021 ECH