Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01452 ATGAAGGAAGGTGAGAAGGTACTGGATCCGCAGCTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCGCAAGTGAACTCCAAAGTCTTCTACTTTCCACAGGGTCACGCCGAACACGCCCACACCAACATTGATCTGAGGGTTCCACCACTCATTCTGTGTAACGTTGAAGCAGTTAAGTTCATGGCAGACCCAGAAACAGATGAAGTGTTCGCGAAGCTGAGTTTGGTTCCGCTCAGAAACTCGGAACTCGGTGCTGACTCGGACTGTGGTGATGACGTGGCAGAACCTTCTTCGGAGAAGCCTGCGTCTTTTGCTAAGACTTTGACTCAGAGCGATGCTAACAATGGTGGGGGGTTTTCGGTTCCGCGGTACTGTGCGGAGACCATTTTTCCGCGGCTGGACTACACGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCACGGGGAGACGTGGAGGTTCCGGCACATTTACCGAGGGACGCCACGTAGGCACCTGTTGACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTCGCTGGGGATTCTGTGGTGTTTCTGAGGGCTGAGAATGGTGATTTGTGTGTTGGGATTCGGAGGGCAAAAAAGGGAATTGGTTCAGGTTCAGGTTCAGGTTCAGGTTCAGCTTCATCATCTGTGTGGAGTTCTGCTTCTGGGTCTGGGAGTGGGAACTGTGGGATTGGGCCTTATGGGCCTTTTTCTTTTTTCTTGAAAGAGGAAAATAAGATATTAAGGAATGGTTGTGTTGGTGGTGGTGGTGGGAATTTGAGTGGGAGGGTAAAAGTGAGGCCTGAGGAAGTTATTGAAGCTGTGAGTCTTGCTGCTAGTAATAAGCCTTTTGAGGTTGTTTATTACCCAAGAGCTAGTACTCCTGAGTTTTGTGTTAAGGCTTCTGCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAAACTGAGGATGCTTCAAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGACCCCATTCGCTGGCCCAATTCACCATGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACATTCCACTCATCAATTTCACACCCTTCTCTCCACCAAGAAAGAAGCTGCGGCCGCAACACCCAGATTTCCCCCTTGATGTTCAATTTCCAATACCAATGTTTTCAGGCAACCAGCTTGGGCCTAACAGCCCCTTGTGTGGTTTTTTGGATAATGCCCCTGCAGGGATACAGGGAGCCAGGCATTCTCAAATTGGAAAATCTCTATCAGATCTCCACCTTAACAATAAACTGCAGTTGGGGATGCTTCCAACTAATATCCAGCAACTTGGAGTGTATACTGGGATTTCAAGTGGTAACATGACCAACCATGATAAGAGCAAAGAAAGCTTATCATGCTTTCTGACCATGGGGAAATCTAGCAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCAGTTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATTTCTAGCTGTTCTAGAGATGTGTTGTCTCGTGGAAAAAGATCACTAGGCGATGATAAGGACAAAGCGAAGTGCGTTTTGGATAACTCCCAATCCACACTCTCACAGCAGTTTTCACCAGGAAAAGCTTCTGCTGCTGAGTTCTCTTGGCAACTTGGCTTGGATACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTAGACCTATCGCGGTTTGGTTCTTATGAAGAGCTGTATAGGAGACTTGCCAACATGTTTGGGATTGAAAGATCTGAGATTTTGAACCATGTGCTCTACTATGATGCAGCAGGTGCTGTTAAGCAAACTGGAGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAAATACTAAAAGGGCCTTTATCACAGGAACTAGGAATGGTGAACATGGACTGGATGCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2115 0.4733 MKEGEKVLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNIDLRVPPLILCNVEAVKFMADPETDEVFAKLSLVPLRNSELGADSDCGDDVAEPSSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIGSGSGSGSGSASSSVWSSASGSGSGNCGIGPYGPFSFFLKEENKILRNGCVGGGGGNLSGRVKVRPEEVIEAVSLAASNKPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPLINFTPFSPPRKKLRPQHPDFPLDVQFPIPMFSGNQLGPNSPLCGFLDNAPAGIQGARHSQIGKSLSDLHLNNKLQLGMLPTNIQQLGVYTGISSGNMTNHDKSKESLSCFLTMGKSSKSLEKSDDVKKHQFLLFGQPILTEQQISSCSRDVLSRGKRSLGDDKDKAKCVLDNSQSTLSQQFSPGKASAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRFGSYEELYRRLANMFGIERSEILNHVLYYDAAGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNTKRAFITGTRNGEHGLDANKTGPLSIFA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01452 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo11g01452 704 CDD B3_DNA 105 206 IPR003340 GO:0003677
Pumo11g01452 704 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Pumo11g01452 704 Gene3D - 321 393 - -
Pumo11g01452 704 ProSiteProfiles PB1 domain profile. 593 673 IPR000270 GO:0005515
Pumo11g01452 704 SMART B3_2 106 208 IPR003340 GO:0003677
Pumo11g01452 704 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo11g01452 704 Gene3D - 592 677 - -
Pumo11g01452 704 SUPERFAMILY DNA-binding pseudobarrel domain 94 207 IPR015300 -
Pumo11g01452 704 FunFam Auxin response factor 321 394 - -
Pumo11g01452 704 FunFam Auxin response factor 104 208 - -
Pumo11g01452 704 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
Pumo11g01452 704 Gene3D - 104 208 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01452 Pumo-Chr11 44996906 45000761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01452 1 677 B3 DNA Binding Superfamily AT4G30080 58.680 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo11g01452 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01452 - - gmx:100814686 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03870 4 79031460 79034996 Pumo11g01452 11 44996906 45000761 PCT