Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01451 ATGGTCAAAAAGAATCAGAGGAAAAAGGAAAAGGATATTCCCCTGCTAACTAACAAAATTGAGATGAAGAGATCCTCATCACAGGAGTCAGTTGCACCCAGAAAATGCTTGCATTGTGAGGTGACAAAAACGCCGCAATGGAGAGAAGGGCCAATGGGTCCTAAGACCCTATGCAATGCTTGTGGGGTTCGATACCGATCTGGCCGGCTCTTTGCTGAATACCGGCCTGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCCACCCAGGTGACTGTTAGATAA 324 0.463 MVKKNQRKKEKDIPLLTNKIEMKRSSSQESVAPRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVASLHSNSHKKVLEIRNRATQVTVR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01451 107 ProSitePatterns GATA-type zinc finger domain. 36 61 IPR000679 GO:0006355|GO:0043565
Pumo11g01451 107 FunFam GATA transcription factor 22 107 - -
Pumo11g01451 107 Pfam GATA zinc finger 36 69 IPR000679 GO:0006355|GO:0043565
Pumo11g01451 107 CDD ZnF_GATA 35 82 IPR000679 GO:0006355|GO:0043565
Pumo11g01451 107 SMART GATA_3 30 80 IPR000679 GO:0006355|GO:0043565
Pumo11g01451 107 Gene3D - 31 81 IPR013088 GO:0006355|GO:0008270
Pumo11g01451 107 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 32 92 - -
Pumo11g01451 107 ProSiteProfiles GATA-type zinc finger domain profile. 30 66 IPR000679 GO:0006355|GO:0043565
Pumo11g01451 107 PANTHER GATA TRANSCRIPTION FACTOR 5 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01451 Pumo-Chr11 44984191 44984514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01451 25 100 C2C2-Gata Transcription Factor Family AT3G54810 78.947 6.77e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo11g01451 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01451 - - gmx:100781869 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01451 11 44984191 44984514 Pumo11g01451 11 44984191 44984514 ECH