Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01447 ATGGCTTCTGATGGTTCAAGATTTGTAAGATTTCAAGATGATGATGAATTTGCAAAATTGTCAACAACAAAAGGTGCCAATGGAATCAAGCTTAATGGAAAACAAGTTGCTGAGACTAGCAGCAAAAAGGGATTGAAGAAGGACACAAGGAAGTTCCTGAAGGGTAGAGTATTGTCAAGAGTATTCTCAGAGGATTATGAGAGAGTTAGAAAAAGAACATTATTAGATCCCCGGGGACAAACCATTCACCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTCTGTTTGTGGACCCTCTATTCTTTTATTTGCCACTAGTTCGAGATGAAGTGTGCATTGATATTGGCACAGCACTTGAAGTTTTCCTCACAATGATAAGATCAATGGCAGATGTGTTTTACATGATTCAGATTCTCATGAAGTTTCGAACAGCTTATGTTGCTCCTTCTTCTCGGGTATTTGGGAGGGGAGAACTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACCTGATAAAGGGTTTTTGCTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTGTTAATTTGGATTGTGATCCCCAATCTTGGAGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGCTTTATCATCATTTTCCAATACTTGCCAAGGCTGTTTCTGATTTTTCCACTTTCATCCCAAATTATAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACTTGGTGCTTTACATGTTGGCTAGCCATTTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAGAAGTGTCTGCGATATGGAGGAGCCATCTTGTCAATATGGATTCTTTGATTGCAAAAGGGTTGAAGATCCCCTCAGGGTCTCCTGGTTTATAGCAAGTAATATCACAATTTTATGCTCACCAAAGGCTAACTTCTATCAGTTTGGTATATTCGGTGATGCAGTGACATCCCAAGTTACAACCGCCTCATTCTTTCATAAGTACTTTTTTTGTCTCTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTATGTAGGAGAAATAATGTTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGGGTTGCTGATTGGTAATATGCAGACATACCTCCAATCAACAACTGTCCGCTTAGAAGAGTGGAGGGTCAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTTCCTCCAGAACTAAGACAATCTGTGCGCAAATATAACCAATATAAATGGCTGGCCACAAGAGGGGTAGATGAAGAAGCTCTTCTCAAAGGACTTCCAGCTGATCTTAGGAGAGACATCAAGCGCCACCTTTGTCTCGAACTAGTTCGACGAGTCCCATTGTTCGATCAAATGGACGAGAGGATGCTGGACGCAATATGCGAGAGGCTGAAGCCCGCACTGTGCACAGAGAACACATACCTAGTTCGCGAGGGCGATCCCGTGAACGAGACCCTCTTCATAATCAGAGGCCATCTCGATTCCTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCCTGCCGCATCGGCCCAGGCGATTTCTGCGGCGAGGAGCTCCTAACATGGGCCTTAGGGCCCCGCCCAAGCTTCATCCTCCCCTCTTCCACTCGCACCGTCAAGGCCATCTCAGAAGTCGAGGCCTTCGCCCTCATGGCCGAAGACCTCAAGTTCGTTGCCTCGCAGTTCCGTAGACTGCACAGCAAACAACTCAGACACAAGTTCAGGTTTTACTCGCACCAGTGGAGGACGTGGGCTGCGTGTTTCATACAAGCTGCATGGAGGCGCTACAAGAAGCGAAAGGAAGCTGCGGAACTGAGAGCGAGGGAGAATGTTCGTGAGGGTGAGACAGCAGCGTATAGATCGGGGATTGGTGGTTGTGTATGCTACGAGGATGGCTAG 1992 0.4568 MASDGSRFVRFQDDDEFAKLSTTKGANGIKLNGKQVAETSSKKGLKKDTRKFLKGRVLSRVFSEDYERVRKRTLLDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGTALEVFLTMIRSMADVFYMIQILMKFRTAYVAPSSRVFGRGELVIDSSKIATRYLIKGFCLDFIAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIIKATGVVTETAWAGAAYNLVLYMLASHFLGASWYLLSIERQEACWRSVCDMEEPSCQYGFFDCKRVEDPLRVSWFIASNITILCSPKANFYQFGIFGDAVTSQVTTASFFHKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMFAIVVATLGLVLFGLLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALGPRPSFILPSSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRARENVREGETAAYRSGIGGCVCYEDG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01447 663 ProSiteProfiles IQ motif profile. 613 641 IPR000048 GO:0005515
Pumo11g01447 663 Gene3D Jelly Rolls 475 595 IPR014710 -
Pumo11g01447 663 Gene3D Helix hairpin bin 404 468 - -
Pumo11g01447 663 FunFam Cyclic nucleotide-gated ion channel 1 475 593 - -
Pumo11g01447 663 PRINTS EAG/ELK/ERG potassium channel family signature 390 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo11g01447 663 PRINTS EAG/ELK/ERG potassium channel family signature 440 447 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo11g01447 663 PRINTS EAG/ELK/ERG potassium channel family signature 372 383 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo11g01447 663 PRINTS EAG/ELK/ERG potassium channel family signature 346 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo11g01447 663 PRINTS EAG/ELK/ERG potassium channel family signature 257 267 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo11g01447 663 PRINTS EAG/ELK/ERG potassium channel family signature 140 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo11g01447 663 Gene3D - 88 401 - -
Pumo11g01447 663 SMART cnmp_10 477 608 IPR000595 -
Pumo11g01447 663 SUPERFAMILY cAMP-binding domain-like 407 603 IPR018490 -
Pumo11g01447 663 Pfam Ion transport protein 85 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo11g01447 663 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Pumo11g01447 663 CDD CAP_ED 477 608 IPR000595 -
Pumo11g01447 663 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 640 - -
Pumo11g01447 663 SUPERFAMILY Voltage-gated potassium channels 76 399 - -
Pumo11g01447 663 ProSiteProfiles cAMP/cGMP binding motif profile. 477 574 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01447 Pumo-Chr11 44922039 44926917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01447 51 656 Ion Channels AT2G28260 79.407 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01447 K05391 - gmx:100791992 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03863 4 78945462 78949695 Pumo11g01447 11 44922039 44926917 PCT