LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g01437	ATGGAAGTGAGTGACACAGGAGCTCCCCTAAGTGTTCCAGTAGGTGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCCATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCCATTCATAGATCTGCGCCTGCCTTTATACAATTAGATACAAAATTATCCATTTTTGAAACAGGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTGATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGTGGGGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTGACTATGGCGGAATATTTTCGAGATGTCAATGAACAAGATGTACTTCTATTTATCGACAATATATTCCGCTTCGTCCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACTAAAGAGGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGACGATTTAACCGATCCCGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCGGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAGACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATCCTTGGCTTGGACGAATTATCCGAAGAAGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTTTTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAATTTGAAGAAATGA	1233	0.4079	MEVSDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMESNLKK	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g01437	410	Gene3D	-	10	286	IPR027417	-
	Pumo11g01437	410	PANTHER	ATP SYNTHASE	1	407	-	-
	Pumo11g01437	410	SMART	AAA_5	76	268	IPR003593	GO:0016887
	Pumo11g01437	410	NCBIfam	F0F1 ATP synthase subunit beta	1	402	IPR005722	GO:0015986\|GO:0045261\|GO:0046933
	Pumo11g01437	410	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	64	284	IPR000194	GO:0005524
	Pumo11g01437	410	CDD	F1-ATPase_beta_CD	11	289	-	-
	Pumo11g01437	410	FunFam	ATP synthase subunit beta	1	336	-	-
	Pumo11g01437	410	ProSitePatterns	ATP synthase alpha and beta subunits signature.	275	284	IPR020003	GO:0005524
	Pumo11g01437	410	FunFam	ATP synthase subunit beta	10	286	-	-
	Pumo11g01437	410	SUPERFAMILY	C-terminal domain of alpha and beta subunits of F1 ATP synthase	287	402	-	-
	Pumo11g01437	410	Hamap	ATP synthase subunit beta [atpB].	1	402	IPR005722	GO:0015986\|GO:0045261\|GO:0046933
	Pumo11g01437	410	FunFam	ATP synthase subunit beta	287	406	-	-
	Pumo11g01437	410	CDD	ATP-synt_F1_beta_C	291	398	-	-
	Pumo11g01437	410	Gene3D	-	287	410	IPR024034	-
	Pumo11g01437	410	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	11	289	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g01437	Pumo-Chr11	44768244	44769476	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g01437	3	341	Primary Pumps ATPases(2)	AT1G20260	27.100	7.30e-28	113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g01437	K02112		-	pvy:33127525	790.801