Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01430 ATGAGCAGCTTAAGGCCCGAATTGCATGTTGCACAACAACTTCGGCGCGACAAACTGAGGATCCAAAACAACAGTTCCCAACACTTGCAAGAGTTCCCCAACAACCTAGAACAGTTATCATTACTCCCAGGTTTCAACTTGGATCTCCTTCAAGTAAGAAACGTTCGAAATAATGGCAACATGCTTGACGAAGCTGCAGCACTTTATTCATCGGAAATGATCACTTTTTCAACCCCTTCGAACCCTTTATCCGCTCCTAGAAACCCTTTGGAGTGTCAAGAGCTTATGATGGCTCAGTATGGTTCAACTTCGTTTCCTCATTCATCATCCCCAAAAGACCAACAACTATGTGAACCACGCAACTTGGGTGCTAATTGGATGGTGAATTACAACGAAAGCAACCCCAACAACAACAACACTTTCTTCCCTTCCGAGCTCAATAACAATGCTTCTGGTGAAATGCATTACCATAATGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATACTCATGGTGAGGCTGTGCTTCATTATGGAAACCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAATAATAATAGTCCATTGGGTTTCAAGAAGATTAATGAACAGTTGCAGGACACAAATCATCCTCATCAGGGTCTGTCATTGTCACTCTCATCAAACTCACAACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGACGACCCTCAATACAATTCAAAGTCTGTGAAATCCTCCTCCACCATGAAGCTGAATGTGCTCTCAAACAACAACAACAACAACACTGTTGTTTATCGAAATGTTGGCCCTCTTGGTCCTTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGGTTCTTGAGGCCGTGCCAACAGCTGTTAGATGAGTGGTGCTGTCAATCGGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTACTTCTGCTACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGCTGCAAAAGGTGGTGGCAATTCGGGTGCTTCATGCTCTGTGTTGTATATTTCAAACGAAAATAATAATAATAATAATACTTCTAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCGTTCGAATCGGTGGCGGGTCTAAGTTCGGCTACCCCTTATGTCTCCTTGGCTCTCAAGTCAGTTTCAAAACACTTCAGGTGCCTAAAAAATGCAATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTCTCAATACCAACCACAAGTACTATTAGTAAATTCGACAATAATATGGCCAGGCTAAGGTGCATGGACCAAAGCTTTCAAAAAAACAAATCTGGCGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTTAAAGCTTGGCTGTTTGAGCATTTCCTTCATCCATACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACGGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGGGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCACCAGAAGCCCACCAAACCTCAAGTAAAAATGACCAGGGAGCTTCTGCCTCTGAAGGAAGTAACAACCAGCCCAAATCTGACAACCAACCTCTAAGCAGGTTTGGCACGCATGCATCATCACACGCAATCCCTGAAAAGCAATTTCAGTGTTTGGAAATGGGGTCATCCTCCTCTGCAGGCAACGAGGAACAACACATTGGAATGGAGGAAGACCAATGGAGTCAAGAGAAGAGGTCGAAACTGGAATGCCAGATTGCTACCACACCAAGCATGGATGGGACAGTGATGGGTTTTATGCCATACCGTAGAGGTGGACTTGAGGGTCTTGGATCTGTGTCACTCACTCTTGGTCTTAGGCATGGTGTTGAAGGTGTGCAACAACAACAACAACTACAGCAAGAGGAGCGGCTTAGGCGTCAGTTTGGAGGGCATATGATTCATGACTTTGTGGGCTAG 2196 0.4508 MSSLRPELHVAQQLRRDKLRIQNNSSQHLQEFPNNLEQLSLLPGFNLDLLQVRNVRNNGNMLDEAAALYSSEMITFSTPSNPLSAPRNPLECQELMMAQYGSTSFPHSSSPKDQQLCEPRNLGANWMVNYNESNPNNNNTFFPSELNNNASGEMHYHNALQDMAYGVWGGNTHGEAVLHYGNQANNELRFGGANLWTNNNNSPLGFKKINEQLQDTNHPHQGLSLSLSSNSQQSKPCFEEGSASDDPQYNSKSVKSSSTMKLNVLSNNNNNNTVVYRNVGPLGPFTGYATILKSSRFLRPCQQLLDEWCCQSEWVSRDVSAASTSATAGDALNVDESAAKGGGNSGASCSVLYISNENNNNNNTSNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGEDFSIPTTSTISKFDNNMARLRCMDQSFQKNKSGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGAPEAHQTSSKNDQGASASEGSNNQPKSDNQPLSRFGTHASSHAIPEKQFQCLEMGSSSSAGNEEQHIGMEEDQWSQEKRSKLECQIATTPSMDGTVMGFMPYRRGGLEGLGSVSLTLGLRHGVEGVQQQQQLQQEERLRRQFGGHMIHDFVG 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01430 731 CDD homeodomain 507 568 IPR001356 GO:0003677
Pumo11g01430 731 Pfam Associated with HOX 291 448 IPR006563 -
Pumo11g01430 731 SUPERFAMILY Homeodomain-like 509 573 IPR009057 -
Pumo11g01430 731 MobiDBLite consensus disorder prediction 644 658 - -
Pumo11g01430 731 ProSiteProfiles 'Homeobox' domain profile. 504 567 IPR001356 GO:0003677
Pumo11g01430 731 SMART prehox3 286 449 IPR006563 -
Pumo11g01430 731 MobiDBLite consensus disorder prediction 216 256 - -
Pumo11g01430 731 MobiDBLite consensus disorder prediction 581 616 - -
Pumo11g01430 731 MobiDBLite consensus disorder prediction 578 616 - -
Pumo11g01430 731 Pfam Homeobox KN domain 524 563 IPR008422 GO:0003677|GO:0006355
Pumo11g01430 731 Gene3D - 510 572 - -
Pumo11g01430 731 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 205 595 - -
Pumo11g01430 731 SMART HOX_1 507 571 IPR001356 GO:0003677
Pumo11g01430 731 MobiDBLite consensus disorder prediction 634 658 - -
Pumo11g01430 731 FunFam BEL1-like homeodomain protein 9 510 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01430 Pumo-Chr11 44662474 44668120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01430 218 576 Homeobox Transcription Factor Family AT1G19700 36.745 5.22e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo11g01430 POX 2.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01430 - - gmx:100793050 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03853 4 78835509 78842461 Pumo11g01430 11 44662474 44668120 PCT